Minia protocols

Minia specifications


Unique identifier OMICS_00022
Name Minia
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Rayan Chikhi <>

Publication for Minia

Minia IN pipeline

PMCID: 5717231
PMID: 29214047
DOI: 10.1038/s41522-017-0043-0

[…] designated as novel c. difficile isolates were downloaded from the ncbi sequence read archive (see table┬ás1 for accessions), trimmed for quality using trimmomatic46 and assembled into contigs using minia.47 contigs containing portions of 16s rrna genes were identified using blastn48 and extracted for amplicon simulations. for each isolate, we subsequently simulated 16s rrna amplicon sequence […]

Minia institution(s)
Computer Science department, ENS Cachan / IRISA / INRIA, Rennes, France; Algorizk, Paris, France
Minia funding source(s)
Supported with grant associated with the MAPPI project (ANR-10-COSI-0004) and the GATB project (ANR-12-EMMA-0019).

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