miniMDS specifications


Unique identifier OMICS_17486
Name miniMDS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Intra- or inter-chromosomal files.
Input format BED
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Numpy, SciKit-learn, pymp, mayavi, ImageMagick, Scipy, Matplotlib
Maintained Yes



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  • person_outline Shaun Mahony <>

Publication for miniMDS

miniMDS institution(s)
Department of Biochemistry and Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA
miniMDS funding source(s)
This work was supported by the National Science Foundation Graduate Research Fellowship Program under Grant No. DGE1255832.

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