MinimumDistance statistics

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MinimumDistance specifications

Information


Unique identifier OMICS_02066
Name MinimumDistance
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.8.1
Stability Stable
Requirements
methods, BiocGenerics, IRanges, GenomicRanges, DNAcopy, utils, lattice, RUnit, ff, SNPchip, foreach, matrixStats, R(>=3.01), msm, VanillaICE(>=1.26.1), Biobase(>=2.23.6), oligoClasses(>=1.24.0), human610quadv1bCrlmm(>=1.0.3)
Maintained Yes

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Documentation


Maintainer


  • person_outline Robert B. Scharpf <>

MinimumDistance in publication

PMCID: 3576329
PMID: 23234608
DOI: 10.1186/1471-2105-13-330

[…] waves. we use circular binary segmentation to segment the minimum distance and maximum a posteriori estimation to infer de novo cnvs from the segmented genome. compared to penncnv on simulated data, minimumdistance identifies fewer false positives on average and is comparable to penncnv with respect to false negatives. genomic waves contribute to discordance of penncnv and minimumdistance […]


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