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MINMA specifications

Information


Unique identifier OMICS_25426
Name MINMA
Alternative name Missing data Imputation incorporating Network and adduct ion information in Metabolomics Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Jian Kang
  • person_outline Tianwei Yu

Publication for Missing data Imputation incorporating Network and adduct ion information in Metabolomics Analysis

MINMA citations

 (8)
library_books

High density genetic map construction and QTLs identification for plant height in white jute (Corchorus capsularis L.) using specific locus amplified fragment (SLAF) sequencing

2017
BMC Genomics
PMCID: 5421330
PMID: 28482802
DOI: 10.1186/s12864-017-3712-8

[…] male parent) and local variety ‘Aidianyesheng’ (male parent, supplied by the National Medium-term Genebank of Jute Germplasm Resources). Cultivar ‘179’ was derived from the cross ‘Meifeng No. 2’ and ‘Minma No. 5’; ‘Aidianyesheng’ is a long-established local variety. The mapping population consisted of 100 individuals and was developed by single seed descent (F8) at Fujian Agriculture and Forestry […]

library_books

Mixed Total Variation and L1 Regularization Method for Optical Tomography Based on Radiative Transfer Equation

2017
PMCID: 5322575
PMID: 28280517
DOI: 10.1155/2017/2953560

[…] dn+μan+1−Dn+1.The minimization of subproblems in () can be iteratively solved by splitting it into the minimizations of μa and 𝒟 separately. This suggests the following steps. Step 1 . (29)μan+1=arg⁡minμa⁡12∑i=1sFiμa−MiL2∂X2+α∫X∇μa+η2Dn−μa−bdn22. […]

library_books

Improved Measures of Integrated Information

2016
PLoS Comput Biol
PMCID: 5117999
PMID: 27870846
DOI: 10.1371/journal.pcbi.1005123

[…] h of these optimizations are feasible and interesting to perform in practice and let us find out what the corresponding factorizations and ϕ-measures are.The mathematics problem we wish to solve is ϕ≡minMA,MBd(p,q)(27) i.e., minimizing d(p, q) over MA and MB given the constraints that MA and MB are markov Matrices: M·jA=1, M·j′B=1, MijA≥0 and Mi′j′B≥0. specifies the options for how p and q are co […]

library_books

Interval valued fuzzy \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{ 69pt} \begin{document}$$\phi$$\end{document}ϕ tolerance competition graphs

2016
Springerplus
PMCID: 5110530
PMID: 27917352
DOI: 10.1186/s40064-016-3463-z

[…] re Xv+={u:μB(v,u→)>0} and mv+:Xv+→[0,1]×[0,1] defined by mv+=μB(v,u→)=[μB-(v,u→),μB+(v,u→)] Here, B is an interval-valued fuzzy relation on a set X, is denoted by μB:X×X→[0,1]×[0,1] such thatμB-(x,y)≤minμA-(x),μA-(y)μB+(x,y)≤minμA+(x),μA+(y) An interval-valued fuzzy graph of a graph G∗=(V,E) is a fuzzy graph G=(V,A,B), where A=[μA-,μA+] is an interval-valued fuzzy set on V and B=[μB-,μB+] is a sym […]

library_books

High Speed GPU Based Fully Three Dimensional Diffuse Optical Tomographic System

2014
PMCID: 4003791
PMID: 24891848
DOI: 10.1155/2014/376456

[…] model predicted F(μ a, κ) and the experimental measurement (M E) is minimum. To minimize the error, the cost functional χ(μ a, κ) is minimized and the cost functional is defined as [] (5)χ(μa,k)=arg{minμa,k||[ME−F(μa,k)]||}, where ||·|| is L 2 norm. Through Gauss-Newton and Levenberg-Marquardt [, ] algorithms, the minimized form of the above equation for the optical parameter update can be writte […]

library_books

Improvement of image quality of time domain diffuse optical tomography with lp sparsity regularization

2011
Biomed Opt Express
PMCID: 3233252
PMID: 22162823
DOI: 10.1364/BOE.2.003334

[…] n the measured MTF data and the MTF data calculated by solving the forward problem. Reconstruction to estimate the μa distribution is conventionally achieved by solving the following optimization, (2)minμa‖M−M^(μa)‖2+λ⋅f(μa),where M and M̂ are the sets of the measured and the calculated MTFs, respectively. λ is a regularization parameter, and f is a regularization function depending on the regular […]

Citations

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MINMA institution(s)
Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA
MINMA funding source(s)
Supported in part by NIH grants R01MH105561, R01GM124061, and MSM/Emory Cardiovascular (MECA) Center for Health Equity.

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