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MINSEQE specifications

Information


Unique identifier OMICS_31112
Name MINSEQE
Alternative name Minimum Information about a high-throughput SEQuencing Experiment
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 1.0
Maintained Yes

Additional information


http://www.fged.org/site_media/pdf/MINSEQE_draft_2008.pdf http://www.fged.org/site_media/pdf/MINSEQE_1.0.pdf

MINSEQE citations

 (6)
library_books

When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors

2018
PMCID: 5876533
PMID: 29495643
DOI: 10.3390/ht7010007

[…] ate issue. However, there are a number of attempts of different consortia to change this prevailing lack of information. As an example, the Functional Genomics Data Society (FGED; []) has published a MINSEQE guideline on their webpage. In addition, the ENCODE (Encyclopedia of DNA Elements) consortium has released experimental data standards and processing pipelines for numerous different next gene […]

library_books

Niche specific gene expression in a parasitic nematode; increased expression of immunomodulators in Teladorsagia circumcincta larvae derived from host mucosa

2017
Sci Rep
PMCID: 5543109
PMID: 28775251
DOI: 10.1038/s41598-017-07092-0

[…] nscripts were mapped onto the T. circumcincta genome assembly (PRJNA72569): http://parasite.wormbase.org/Teladorsagia_circumcincta_prjna72569. The NGS data from this study is fully compliant with the MINSEQE guidelines and has been deposited in the publically available NCBI SRA Database under the following accession number: SRP096620.Parasitological and cytokine-release data was analysed using Gra […]

library_books

Recent advances in candidate gene and whole genome approaches to the discovery of anthelmintic resistance markers and the description of drug/receptor interactions

2014
PMCID: 4266812
PMID: 25516826
DOI: 10.1016/j.ijpddr.2014.07.007

[…] Tool () and the reconstruction and differential analysis of transcriptomic data using Tuxedo suite (i.e., Tophat/Cufflinks: ()).Just as guidelines are being established for experimental design (e.g., MINSEQE), projects are under-way to assess the specificity and sensitivity of these many software applications and establish ‘gold-standard’ methods for data analysis. A key example is the RNA-seq Gen […]

library_books

Dual RNA seq of Parasite and Host Reveals Gene Expression Dynamics during Filarial Worm–Mosquito Interactions

2014
PLoS Negl Trop Dis
PMCID: 4031193
PMID: 24853112
DOI: 10.1371/journal.pntd.0002905

[…] The RNA-seq data were prepared according to “minimum information about a high-throughput sequencing experiment” (MINSEQE) recommendations, deposited in the Gene Expression Omnibus (GEO) database, and can be accessed via the web [accession number […]

library_books

Silicon Era of Carbon Based Life: Application of Genomics and Bioinformatics in Crop Stress Research

2013
Int J Mol Sci
PMCID: 3709742
PMID: 23759993
DOI: 10.3390/ijms140611444

[…] press [] are designed for the storage of expression data. Standard data formats including Minimum Information about Microarray Experiments (MIAME) or Minimum Information about Sequencing Experiments (MINSEQE) are unified to facilitate transcriptome data submission/downloading. Bioinformatics tools dealing with transcriptome alignment, splicing event prediction, and de novo assembly are also availa […]

library_books

Comparability and reproducibility of biomedical data

2012
Brief Bioinform
PMCID: 3713713
PMID: 23193203
DOI: 10.1093/bib/bbs078

[…] e and distribute all necessary information toward achieving reproducibility []. Several standards have been proposed for biomedical data to achieve these goals including MIAME for gene expression [], MINSEQE for sequencing experiment [], MIATA for T cell assays [] or MiFlowCyt for flow cytometry []. In addition to assay protocol information, primary and secondary data, it is important that any pre […]

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