miP3 specifications

Information


Unique identifier OMICS_24882
Name miP3
Alternative name microProtein Prediction Program
Interface Command line interface
Restrictions to use None
Input data A file with all proteins in a given genome, a file with a class of proteins for which miPs are to be identified and a file with a list of unwanted domains.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 2.0
Stability Stable
Requirements
Biopython, BLAST+, SOAPpy
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Seung Yon Rhee
  • person_outline Niek de Klein

Publication for microProtein Prediction Program

miP3 institution(s)
Carnegie Institution for Science, Department of Plant Biology, Stanford, CA, USA; Department of Genetics, University Medical Center Groningen, Groningen, Netherlands; Institut Jean-Pierre Bourgin, INRA Centre de Versailles-Grignon, Versailles, France
miP3 funding source(s)
Supported by grants from the National Science Foundation (MCB-1052348, IOS-1026003, and MCB-0820823) and Department of Energy (BER65472) and a seed grant from the Association for Independent Plant Research Institutes (AIPI).

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