MiPred protocols

View MiPred computational protocol

MiPred statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left miRNA precursor prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

MiPred specifications

Information


Unique identifier OMICS_07330
Name MiPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MiPred

MiPred in pipelines

 (3)
2017
PMCID: 5381573
PMID: 28201664
DOI: 10.1093/gbe/evx023

[…] danio rerio (n=349 precursor sequences), takifugu rubripes (n=131), tetraodon nigroviridis (n=132), and oryzias latipes (n=168). secondary structures of the precursor sequences were checked using mipred (). a small-rna-seq library from developing f. heteroclitus embryos (geo data set gse70953) sequenced using methods described in also was scanned for the presence of mature mirna sequences. […]

2015
PMCID: 4702033
PMID: 26770029
DOI: 10.6026/97320630011550

[…] were subjected to screening by using blastx program to remove the protein coding sequences and excluded them in sixth step. in next step, results for mirna candidates were further narrowed by using mipred software (http://www.bioinf.seu. edu.cn/ mirna/) to distinguish the real mirna from that of a pre-mirna like hairpin and pseudo mirna precursor in ninth step []. further, we removed […]

2011
PMCID: 3102724
PMID: 21637827
DOI: 10.1371/journal.pone.0020517

[…] to have a detailed view of the opposite strands of pre-mirnas, we also collected those mirnas that could be accurately mapped to the reverse complementary sequences of human mirna precursors. mipred scores of opposite strands and corresponding pre-mirnas were estimated using the mipred web server . multiple sequence alignments of mirna precursors and other ncrnas were performed using […]


To access a full list of citations, you will need to upgrade to our premium service.

MiPred in publications

 (32)
PMCID: 5815207
PMID: 29448950
DOI: 10.1186/s13567-018-0512-3

[…] to determine whether these srna sequences were genuine porcine mirna, we investigated their hairpin structures, dicer cleavage sites, and minimal free energies using mireap v0.2 []. mfold [] and mipred [] to predict the typical secondary structures of the mirna precursors and identify the pseudo-pre-mirna. in total, 95 potential novel mirna candidates with lengths ranging from 20 to 24 nt […]

PMCID: 5763424
PMID: 29297389
DOI: 10.1186/s13326-017-0143-z

[…] features and two nucleotide pairing features, then apply the svm classifier pmirp []. jiang et al. added mfe and p-value as the features based on the feature set in [], and proposed the classifier mipred based on rf method [], limin jiang. et [] applied bp neural network to identify real and pseudo pre-mirnas, and proved the superiority of bp neural network by comparing with triplet-svm、rf […]

PMCID: 5381573
PMID: 28201664
DOI: 10.1093/gbe/evx023

[…] danio rerio (n=349 precursor sequences), takifugu rubripes (n=131), tetraodon nigroviridis (n=132), and oryzias latipes (n=168). secondary structures of the precursor sequences were checked using mipred (). a small-rna-seq library from developing f. heteroclitus embryos (geo data set gse70953) sequenced using methods described in also was scanned for the presence of mature mirna sequences. […]

PMCID: 5011242
PMID: 27635401
DOI: 10.1155/2016/9565689

[…] []. the method also utilized the multiple species of mirna sequences and structural features. it proved that mirna genes could be detected effectively in large scale of different species genomes., mipred classifier was tested for predicting mirna in 2007 []. the method utilized random forest classifier algorithm. the prediction accuracy of mipred is 10% higher than that of triplet-svm; […]

PMCID: 4975701
PMID: 27536341
DOI: 10.1016/j.csbj.2016.07.002

[…] for establishing predictor of mirna genes ., the support vector machine method can be used to discriminate between real and pseudo pre-mirnas as implemented in triplet-svm . similar to triplet-svm, mipred additionally employed the thermodynamics-related features and random forest algorithm for achieving higher performance. a more sophisticated algorithm in promir , termed the paired hidden […]


To access a full list of publications, you will need to upgrade to our premium service.

MiPred institution(s)
State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, Southeast University, Nanjing, China

MiPred reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MiPred