miR-Abela statistics
miR-Abela specifications
Information
Unique identifier | OMICS_05120 |
---|---|
Name | miR-Abela |
Interface | Web user interface |
Restrictions to use | None |
Computer skills | Basic |
Stability | No |
Maintained | No |
Publication for miR-Abela
miR-Abela in publications
(14)[…] function, out of 20 generated structures., for the identification of putative mirna precursor sequences located at the introns and utrs of the isolated oeaox genes, the publicly available software mir-abela (http://www.mirz.unibas.ch/cgi/pred_mirna_genes.cgi) was used. further steps related with pre-mirnas validation, prediction of the secondary structure of predicted pre-mirna, screening […]
New genetic regulators question relevance of abundant yolk protein production in C. elegans
[…] candidates (). we uncovered a premature stop allele and a splice site acceptor variant in y54g2a.3, which we named vrp-1 (vitellogenin-regulating caenorhabditis-specific protein) (, ). according to mir-abela analysis, the first intron of the vrp-1 gene contains a potential functional rna. we therefore also rescued the vrp-1(lst461) strain with a cdna construct showing that its protein-coding […]
[…] used to identify mirnas in the bumblebee genomes, including sequencing of mirnas in b. terrestris, a homology search of a. mellifera mirnas from mirbase [], and mirna prediction using mircat [] and mir-abela []. these methods identified 130 and 115 mirnas in b. terrestris and b. impatiens, respectively (additional file ), including a number of previously uncharacterized mirnas in b. terrestris. […]
[…] approaches have been developed that complement the experimental analysis. these in silico resources include mirscam, mirseeker, phylogenetic shadowing, mirank, mirdeep, miranalyzer, promir ii, mir-abela, triplet-svm, vmir, rna micro, bayesmirnafind, one-classmirnafind, mipred, srnaloop, and findmirna []. additionally, mirandola, an extracellular circulating mirna database, allows users […]
A Review of Computational Tools in microRNA Discovery
[…] and palade, ). non-comparative methods, which use intrinsic structural features of mirna, include algorithms like palgrade (bentwich et al., ), triplet-svm (xue et al., ), mipred (ng and mishra, ), mir-abela (sewer et al., ), and hhmmir (kadri et al., )., palgrade was proposed by bentwich et al. () and combined computational predictions with microarray analysis and sequence-directed cloning. […]
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