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miR-Abela specifications

Information


Unique identifier OMICS_05120
Name miR-Abela
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for miR-Abela

miR-Abela in publications

 (14)
PMCID: 5855819
PMID: 29462998
DOI: 10.3390/ijms19020597

[…] function, out of 20 generated structures., for the identification of putative mirna precursor sequences located at the introns and utrs of the isolated oeaox genes, the publicly available software mir-abela (http://www.mirz.unibas.ch/cgi/pred_mirna_genes.cgi) was used. further steps related with pre-mirnas validation, prediction of the secondary structure of predicted pre-mirna, screening […]

PMCID: 4639837
PMID: 26553710
DOI: 10.1038/srep16381

[…] candidates (). we uncovered a premature stop allele and a splice site acceptor variant in y54g2a.3, which we named vrp-1 (vitellogenin-regulating caenorhabditis-specific protein) (, ). according to mir-abela analysis, the first intron of the vrp-1 gene contains a potential functional rna. we therefore also rescued the vrp-1(lst461) strain with a cdna construct showing that its protein-coding […]

PMCID: 4414376
PMID: 25908251
DOI: 10.1186/s13059-015-0623-3

[…] used to identify mirnas in the bumblebee genomes, including sequencing of mirnas in b. terrestris, a homology search of a. mellifera mirnas from mirbase [], and mirna prediction using mircat [] and mir-abela []. these methods identified 130 and 115 mirnas in b. terrestris and b. impatiens, respectively (additional file ), including a number of previously uncharacterized mirnas in b. terrestris. […]

PMCID: 4058468
PMID: 24991086
DOI: 10.1155/2014/259131

[…] approaches have been developed that complement the experimental analysis. these in silico resources include mirscam, mirseeker, phylogenetic shadowing, mirank, mirdeep, miranalyzer, promir ii, mir-abela, triplet-svm, vmir, rna micro, bayesmirnafind, one-classmirnafind, mipred, srnaloop, and findmirna []. additionally, mirandola, an extracellular circulating mirna database, allows users […]

PMCID: 3654206
PMID: 23720668
DOI: 10.3389/fgene.2013.00081

[…] and palade, ). non-comparative methods, which use intrinsic structural features of mirna, include algorithms like palgrade (bentwich et al., ), triplet-svm (xue et al., ), mipred (ng and mishra, ), mir-abela (sewer et al., ), and hhmmir (kadri et al., )., palgrade was proposed by bentwich et al. () and combined computational predictions with microarray analysis and sequence-directed cloning. […]


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miR-Abela institution(s)
Biozentrum, Universität Basel, Basel, Switzerland

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