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[email protected]@N specifications

Information


Unique identifier OMICS_02807
Name [email protected]@N
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, PHP, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

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This tool is not available anymore.

Publication for [email protected]@N

[email protected]@N citations

 (3)
library_books

A Systems' Biology Approach to Study MicroRNA Mediated Gene Regulatory Networks

2013
Biomed Res Int
PMCID: 3848080
PMID: 24350286
DOI: 10.1155/2013/703849

[…] 1.0) []. In addition, we generated a list of putative TFs of miRNAs with binding sites in the 10 kb upstream region of the miRNA genes using information from the databases PuTmiR (release 1.0) [] and [email protected]@N (version 1.2.1) [], and from the table of TFs with conserved binding sites in the UCSC genome browser (hg18) []. Information about protein interactions was extracted from the Human Protein Re […]

library_books

Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater

2012
Nucleic Acids Res
PMCID: 3592406
PMID: 22941648
DOI: 10.1093/nar/gks821

[…] predict the TFBSs associated with human miRNAs. For example, miRGen () has mapped all vertebrate TF matrices from TRANSFAC to the regions spanning 5-kb upstream to 1-kb downstream of the miRNA TSSs. [email protected]@N () has predicted potential TFBSs in the promoter regions of human miRNAs based on PSSMs from JASPAR and the ‘CpG island’ signal. However, these methods are based on simple pattern matching an […]

library_books

Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs

2012
Nucleic Acids Res
PMCID: 3467055
PMID: 22798498
DOI: 10.1093/nar/gks657

[…] in TransmiR (release 1.0) (). In addition, we generated a list of putative TFs of miRNAs with binding sites in the 10-kb upstream region of the miRNA genes from the databases PuTmiR (release 1.0) and [email protected]@N (version 1.2.1) and from the table of TFs with conserved binding sites (tfbsConsFactor) in USCS hg18 (,,). We selected this region following the method in Shalgi et al. (), where the 10-kb up […]


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[email protected]@N institution(s)
Cytoskeleton and Cell Plasticity lab, Life Sciences Research Unit-FSCT, University of Luxembourg, Luxembourg, Luxembourg

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