[email protected]@N specifications

Information


Unique identifier OMICS_02807
Name [email protected]@N
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, PHP, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No

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Publication for [email protected]@N

[email protected]@N in publications

 (13)
PMCID: 5206861
PMID: 28096802
DOI: 10.3389/fimmu.2016.00645

[…] were selected between the groups using the qiagen software website analysis. only the mirnas that had at least fivefold changes in expression were included in further analysis. furthermore, the [email protected]@n resource was used to identify mrnas that were targeted by the selected differentially expressed mirnas (). then, we searched for overlaps in the mirna sets using genevenn, a web application […]

PMCID: 4705652
PMID: 26578605
DOI: 10.1093/nar/gkv1221

[…] protein-coding genes. furthermore, this tool investigates the functional properties and disease relevance of proposed interactions with the aid of several external sources. the web application [email protected]@n is based on a meta-regulation network model that illustrates interactions among transcription factors, mirnas and protein-coding genes (). it predicts regulatory networks and sub-networks […]

PMCID: 3848080
PMID: 24350286
DOI: 10.1155/2013/703849

[…] []. in addition, we generated a list of putative tfs of mirnas with binding sites in the 10 kb upstream region of the mirna genes using information from the databases putmir (release 1.0) [] and [email protected]@n (version 1.2.1) [], and from the table of tfs with conserved binding sites in the ucsc genome browser (hg18) []. information about protein interactions was extracted from the human protein […]

PMCID: 3818652
PMID: 24193225
DOI: 10.1038/srep03151

[…] family targets are involved in the increased tumorigenesis and metastasis that we observe in the du145-ln metastasis model., we identified a number of potential mir-424 targets in our system, using [email protected]@n network analysis, which combined mirna and gene expression data from the du145-ln model, together with analysis of gene expression data from premir-424 overexpression in du145-ln4 cells. […]

PMCID: 3633883
PMID: 23626837
DOI: 10.1371/journal.pone.0062582

[…] the up-regulation of mir-574-3p at early stages of differentiation is transcriptionally dependent on sox9, the master gene of chondrogenesis, we analyzed the promoter region of mir-574-3p using the [email protected]@n software . three putative binding sites for sox9 were identified in the promoter sequence suggesting that sox9 may modulate mir-574-3p expression (). after sox9 transfection in the c-20/a4 […]


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[email protected]@N institution(s)
Cytoskeleton and Cell Plasticity lab, Life Sciences Research Unit-FSCT, University of Luxembourg, Luxembourg, Luxembourg

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