MIRA specifications


Unique identifier OMICS_27468
Alternative name Methylation-Based Inference of Regulatory Activity
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Single-nucleotide-resolution, genome-scale DNA methylation data and a set of genomic regions that share a biological annotation.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2.0
Stability Stable
methods, stats, parallel, BiocGenerics, Biobase, IRanges, GenomicRanges, testthat, S4Vectors, BiocStyle, ggplot2, data.table, rmarkdown, knitr, AnnotationHub, R(>=3.4), bsseq, LOLA
Maintained Yes




No version available



  • person_outline Nathan Sheffield
  • person_outline John Lawson

Publication for Methylation-Based Inference of Regulatory Activity

MIRA institution(s)
Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA; Children’s Cancer Research Institute, St. Anna’s Kinderkrebsforschung, Vienna, Austria; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria
MIRA funding source(s)
Supported by the University of Virginia School of Medicine and an NIH training grant (NLM; 5T32LM012416).

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