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mirAct specifications

Information


Unique identifier OMICS_10041
Name mirAct
Interface Web user interface
Restrictions to use None
Input data The mirAct web server requires as input a tab-delimited file containing information of sample classification and gene expression. Besides, several necessary options need to be specified, including species, type of gene identifiers and type of miRNA target predictions.
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for mirAct

mirAct in publications

 (3)
PMCID: 3663800
PMID: 23717626
DOI: 10.1371/journal.pone.0064543

[…] enriched genes with mirna-mrna interaction predictions . recently, methods and web-services for the integrated analysis of mirna and mrna expression data have been developed such as magia , , mmia , miract , mirconnx and mirtrail . genmir++ implements a bayesian learning approach to identify differential mirna-mrna regulation , . hoctar calculates negative correlations between mirna and mrna […]

PMCID: 3257129
PMID: 22272132
DOI: 10.3390/ijms12129265

[…] mirna target databases [,]. we named the new method as mirage (mirna ranking by gene expression). similar algorithms have been developed and available in public, such as t-rex [], sylarray [], and miract []. mirage is focused on the direct targets of mirnas for the analysis and normalization procedures between arrays are included in the algorithm and therefore one can omit array […]

PMCID: 3189187
PMID: 21929766
DOI: 10.1186/1745-6150-6-43

[…] than one mirnas, the relationship between mirnas and their target genes is quite complicated. facing this challenge, several computational programs, including mireduce [], mir [], sylamer [] and miract [] have been developed to evaluate mirna activity changes between different biological states according to gene-expression data. all these programs are based on a general consideration […]


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mirAct institution(s)
Hefei National Laboratory for Physical Sciences at Microscale and School of Life Science, University of Science and Technology of China, Hefei, Anhui, China; School of Computer Science and Technology, University of Science and Technology of China, Hefei, Anhui, China

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