miRBShunter specifications

Unique identifier:
OMICS_15051
Interface:
Graphical user interface
Input data:
The coordinates of the enriched peaks and the Ago2-loaded miRNAs expressed in CLIP-seq experiments.
Operating system:
Unix/Linux
Computer skills:
Medium
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
A list of potential canonical and non-canonical miRNA-binding sites sorted by decreasing DS.
Programming languages:
Python
Version:
1.0
Maintained:
Yes
  • Animals
    • Homo sapiens
    • Mus musculus

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miRBShunter distribution

download

miRBShunter support

Documentation

Maintainer

  • Michele Trabucchi <>

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Credits

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Publications

Institution(s)

Universite Côte d’Azur, Inserm, C3M, Nice, France; Stanford University School of Medicine, Stanford, CA, USA; Universite Côte d’Azur, CNRS, Institut de Pharmacologie Moleculaire et Cellulaire, Valbonne, France

Funding source(s)

This work was supported by FRM [DEQ20140329551]; ANR through the ‘Investments for the Future’ [ANR-11-LABX-0028-01 (LABEX SIGNALIFE)]; FRM [ING20140129224].

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