miRBShunter specifications

Information


Unique identifier OMICS_15051
Name miRBShunter
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Input data The coordinates of the enriched peaks and the Ago2-loaded miRNAs expressed in CLIP-seq experiments.
Output data A list of potential canonical and non-canonical miRNA-binding sites sorted by decreasing DS.
Operating system Unix/Linux
Programming languages Python
Computer skills Medium
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Homo sapiens
    • Mus musculus

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Documentation


Maintainer


  • person_outline Michele Trabucchi <>

miRBShunter article

miRBShunter institution(s)
Universite Côte d’Azur, Inserm, C3M, Nice, France; Stanford University School of Medicine, Stanford, CA, USA; Universite Côte d’Azur, CNRS, Institut de Pharmacologie Moleculaire et Cellulaire, Valbonne, France
miRBShunter funding source(s)
This work was supported by FRM [DEQ20140329551]; ANR through the ‘Investments for the Future’ [ANR-11-LABX-0028-01 (LABEX SIGNALIFE)]; FRM [ING20140129224].

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