MiRCA statistics

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MiRCA specifications

Information


Unique identifier OMICS_15287
Name MiRCA
Alternative name MinIon Reads Correction Algorithm
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Short and long reads from NGS sequencers.
Input format FASTA, FASTQ
Output data Corrected long reads.
Output format FASTA
Biological technology Illumina, Oxford Nanopore
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
  • Plants and Fungi
    • Saccharomyces cerevisiae

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Documentation


Maintainer


  • person_outline Mehdi Kchouk <>

Publication for MinIon Reads Correction Algorithm

MiRCA in publications

 (17)
PMCID: 5948607
PMID: 29652867
DOI: 10.3390/s18041197

[…] of statistics based on the distribution of irrigation-relevant geographical features and artificial facilities. however, its accuracy varies geographically because of differences in data quality. mirca [] is another map that avoids this problem through the use of uniform irrigation data. however, the method used in both gmia and mirca—fusion of non-remote-sensing data—results in coarse […]

PMCID: 5535642
PMID: 28628812
DOI: 10.1016/j.scitotenv.2017.05.242

[…] rates of manure and mineral fertilization was retrieved from the capri model () for the year 2000 and kept constant through the simulation., irrigated cropland areas were identified using the mirca database (). about 9200 km2 of the basin are irrigated (1% of entire danube basin), corresponding to a total of 290 hrus. the swat auto-irrigation option, whereby irrigation is applied […]

PMCID: 5836867
PMID: 29230904
DOI: 10.1111/gcb.13967

[…] is provided in table . in summary, we downloaded a total of 954 downscaled climate maps of t max and t min. temperature maps were overlaid with maps of rice cultivated areas as identified by the mirca dataset (portmann, siebert, & doll, ). we then calculated seasonal average t max and average t min over the months included in the growing seasons and over the gcm's available. […]

PMCID: 5552729
PMID: 28798370
DOI: 10.1038/s41598-017-08214-4

[…] mean co2 concentration; the rcp global annual mean co2 concentration; and the plant-extractable water capacities of soil. from the model, the sowing date for 2000 was found to be similar to that of mirca2000 (ref. ), but changed dynamically based on the simulated temperature and moisture regimens (see sowing date in supplementary note)., three types of simulation, i.e., the historical, future […]

PMCID: 5524928
PMID: 28722026
DOI: 10.1038/ncomms15900

[…] plant types at 0.5° resolution. crop production is represented by 12 specified crop functional types, irrigated or rainfed. spatially explicit data on cropland extent is obtained from the mirca2000 land use data set and the extent of areas equipped for irrigation from siebert et al.. a recently implemented mechanistic irrigation module provides the framework for irrigation transitions […]


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MiRCA institution(s)
Faculty of Sciences of Tunis (FST), Tunis El-Manar University, Tunisia; Laboratory of Technologies of Information and Communication and Electrical Engineering ENSIT, University of Tunis, Tunisia

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