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miRClassify specifications

Information


Unique identifier OMICS_08004
Name miRClassify
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for miRClassify

miRClassify in publications

 (4)
PMCID: 5941466
PMID: 29739335
DOI: 10.1186/s12864-018-4728-4

[…] mapped against the mirna database (mirbase 21), to obtain matching mirna sequences conserved in l. vannamei. the obtained mirnas sequences were used for family classification and annotation with the mirclassify web server []. finally, the srnas that did not map to other mirna sequences were regarded as novel mirnas []. differential expression of the identified mirnas was computed according […]

PMCID: 4718083
PMID: 26819547
DOI: 10.4137/BMI.S29513

[…] mirna species. while the main goal of this review is to focus on various repositories of mirnas and their interactions, it is worthy of note that efforts of computational approaches, such as mirclassify, are also accelerating the overall annotation process of mirnas. in addition, targetscan, miranda, and pictar are the leading programs in the field, as reflected by the number […]

PMCID: 4609795
PMID: 26508990
DOI: 10.1155/2015/178572

[…] used in biology, the classifiers based on network are perhaps more suitable to explain the association []. second, some new bioinformatics classifiers are not included, such as libd3c, hpfp, and mirclassify [–]. particularly, libd3c, classifying the cytokines from the protein sequence, applies ensemble classifiers in each layer to improve the prediction accuracy and uses smote to overcome […]

PMCID: 4793896
PMID: 26238539
DOI: 10.1093/bib/bbv056

[…] (multiple r2 = 0.71), suggesting that an accurate selection of low-scored mirnas can be used to calculate the nf. to pick the reference mirnas, we assigned them to the respective families using mirclassify [], with the goal of including only one element from the same mirna family as accomplished for intracellular mirnas [] because members of the same mirna family share sequence similarities […]


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miRClassify institution(s)
School of Information Science and Technology, Xiamen University, Xiamen, Fujian, China
miRClassify funding source(s)
The work was supported by the Natural Science Foundation of China (Nos. 61370010, 31271405, 81101115), the Natural Science Foundation of Fujian Province of China (Nos. 2011J01371, 2011J05158) and the 2013 Program for New Century Excellent Talents in Fujian Province University.

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