MiRcode statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MiRcode

Tool usage distribution map

This map represents all the scientific publications referring to MiRcode per scientific context
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MiRcode specifications


Unique identifier OMICS_06681
Name MiRcode
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens


  • person_outline Erik Larsson

Publication for MiRcode

MiRcode citations


Identification of cancer related miRNA lncRNA biomarkers using a basic miRNA lncRNA network

PLoS One
PMCID: 5929565
PMID: 29715309
DOI: 10.1371/journal.pone.0196681

[…] . In 2015, Wang et al. identified functional RNA pairs by computing the Pearson correlation coefficients and p-values based on expression profiles []. Zhang et al. developed a competing network using miRcode, StarBase and miRTarBase in HCC, with a focus on the hub nodes of the network []. In 2017, Guo et al. assessed the joint predictive power of miRNAs and lncRNAs using miRNA and lncRNA expressio […]


Identification of long noncoding RNAs involved in muscle differentiation

PLoS One
PMCID: 5834194
PMID: 29499054
DOI: 10.1371/journal.pone.0193898

[…] ir function []. In this way, lncRNAs can increase the amount of target mRNAs that are originally suppressed by miRNAs. To identify miRNAs that could be regulated by selected lncRNAs above (), we used miRcode, the database of miRNA target prediction []. To increase the reliability of the prediction, we utilized the expression data of miRNAs during VSMCs differentiation, which was obtained from GEO […]


Long non coding RNA AC026166.2 001 inhibits cell proliferation and migration in laryngeal squamous cell carcinoma by regulating the miR 24 3p/p27 axis

Sci Rep
PMCID: 5820272
PMID: 29463827
DOI: 10.1038/s41598-018-21659-5

[…] tion or competitive binding sites of miRNAs to reduce translation or degradation of mRNA. Among them, the function of a competitive endogenous RNA (ceRNA) is gaining notable attention. Both mirDB and mircode programs predicted that miR-24-3p may be a target of AC026166.2-001 (Fig. ). miRNAs can typically bind the 3′-UTR (untranslated region) of the mRNA and provide a biological function in the for […]


Construction and analysis for differentially expressed long non coding RNAs and MicroRNAs mediated competing endogenous RNA network in colon cancer

PLoS One
PMCID: 5805314
PMID: 29420609
DOI: 10.1371/journal.pone.0192494

[…] ing miRNA in colon cancer, a ceRNA network graph was constructed based on above data and visualized using Cytoscape v3.5.0 (). We found that 9 DElncRNAs could interact with the 13 DEmiRNAs retrieving miRcode database ().We searched for targeted mRNAs based on 13 miRNAs using them iRanda, PicTar, TargetScan and miRDB database. The final targeted genes were selected, which most were included in all […]


Molecular Network Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma

PMCID: 5793195
PMID: 29351231
DOI: 10.3390/genes9010044

[…] Disease) database [], the Human miRNA Disease Database (HMDD) [], and database of Differentially Expressed MiRNAs in human Cancers dbDEMC []. In addition, miRNA-target interaction databases including miRcode [] and miRanda [,,,,,,,], and ceRNA databases such as long non-coding competing endogenous database (lnCeDB) [] have been developed, which provide much useful information.In this study, we dev […]


Integrative analysis of lncRNAs and miRNAs with coding RNAs associated with ceRNA crosstalk network in triple negative breast cancer

PMCID: 5731337
PMID: 29276392
DOI: 10.2147/OTT.S149308

[…] s and 11 normal samples. We used the WGCNA and protein–protein interaction (PPI) network to identify hub mRNAs from the differentially expressed mRNAs (DEmRNAs) profile. The databases, miRTarBase and miRcode, were used to screen the key differentially expressed lncRNAs (DElncRNAs) and differentially expressed micro RNAs (DEmiRNAs), as well as DEmiRNAs-DEmRNAs interactions. Hereafter, we constructe […]

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MiRcode institution(s)
Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

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