miRdentify specifications

Information


Unique identifier OMICS_05119
Name miRdentify
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline miRdentify Team

Publication for miRdentify

miRdentify citations

 (2)
library_books

Novel equine tissue miRNAs and breed related miRNA expressed in serum

2016
BMC Genomics
PMCID: 5080802
PMID: 27782799
DOI: 10.1186/s12864-016-3168-2

[…] re mature and hairpin combinations identified by mirDeep2 compared to miRBase), from 131 to 256 were expressed per library (average = 183 (27 %)). The number of known miRNAs per library identified by miRdentify ranged from 14 to 164 (average = 56). A total of 2,493 regions in the equine genome expressed in the dataset met the miRDeep2 criteria and thus were considered as novel candidate miRNAs by […]

library_books

Computational Prediction of miRNA Genes from Small RNA Sequencing Data

2015
Front Bioeng Biotechnol
PMCID: 4306309
PMID: 25674563
DOI: 10.3389/fbioe.2015.00007

[…] miRdentify has recently been released to the public to analyze massive pooled data (Hansen et al., ). It requires that both guide and passenger miRNA strands are detected and evaluates 10 features of […]

miRdentify institution(s)
Department of Molecular Biology and Genetics (MBG), Aarhus University, Aarhus, Denmark; Denmark Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark

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