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Number of citations per year for the bioinformatics software tool miRdSNP
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Protocols

miRdSNP specifications

Information


Unique identifier OMICS_00389
Name miRdSNP
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for miRdSNP

miRdSNP citations

 (6)
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Association of the PLCB1 gene with drug dependence

2017
Sci Rep
PMCID: 5579249
PMID: 28860459
DOI: 10.1038/s41598-017-10207-2
call_split See protocol

[…] rase reporter system to test the possible impact of these SNPs on the regulation of gene expression mediated by miRNAs, as previously described. The prediction tools FuncPred, mirWalk, mirSNP, mrSNP, mirdSNP, miRNASNP and RNAhybrid were used to select miRNAs which binding sites in PLCB1 is potentially affected by these SNPs. We chose the best predictions for each SNP: for rs1047383, hsa-miR-124-1, […]

library_books

Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico

2016
BMC Genet
PMCID: 4880969
PMID: 27230431
DOI: 10.1186/s12863-016-0372-7

[…] fy the efficiency of miRNA binding to the 3’UTR of a gene, resulting in gene dysregulation. Consequently, we explored each mutation identified in the Indigenous population in the following databases: miRdSNP [], mrSNP [] and RNAsnp []. We plotted our results using the UCSC browser (http://genome.ucsc.edu/cgi-bin/hgGateway). […]

library_books

Bioinformatic tools for microRNA dissection

2015
Nucleic Acids Res
PMCID: 4705652
PMID: 26578605
DOI: 10.1093/nar/gkv1221

[…] nding sites, which can be combined with researchers’ own GWAS or eQTL data sets to identify the putative miRNA-related SNPs associated with diseases, thus directing subsequent functional studies. The miRdSNP () database is a comprehensive data source on disease-associated SNPs that provides robust tools to explore their distance from miRNA target sites on the 3′ UTRs of human genes. It also helps […]

library_books

Novel Insights into miRNA in Lung and Heart Inflammatory Diseases

2014
PMCID: 4058468
PMID: 24991086
DOI: 10.1155/2014/259131

[…] ntly increased susceptibility (p = 6.81 × 10−6) and increased mature miR-196a expression (P = 0.001) []. Few databases for miRNA-related genetic variants are Patrocles, dbSMR, PolymiRTS, MicroSNiPer, miRdSNP, and dPORE-miRNA [].These studies suggest the potentiality of genetic variant in disease susceptibility. In future, the allelic variant with low disease susceptibility could be explored in the […]

library_books

Illuminating microRNA Transcription from the Epigenome

2013
Curr Genomics
PMCID: 3580781
PMID: 23997652
DOI: 10.2174/138920213804999183

[…] n complex disease etiology.Several databases and web servers have been developed to facilitate data mining of GVs in miRNA-related genomic regions, including Patrocles, dbSMR, PolymiRTS, MicroSNiPer, miRdSNP, and dPORE-miRNA (see “Resource List”). […]

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BCL9 and C9orf5 Are Associated with Negative Symptoms in Schizophrenia: Meta Analysis of Two Genome Wide Association Studies

2013
PLoS One
PMCID: 3558516
PMID: 23382809
DOI: 10.1371/journal.pone.0051674
call_split See protocol

[…] co analysis: SNP Functional Portal (http://brainarray.mbni.med.umich.edu/Brainarray/Database/SearchSNP/snpfunc.aspx), SNP Function Prediction from NIEHS (http://snpinfo.niehs.nih.gov/snpfunc.htm) and miRdSNP (http://mirdsnp.ccr.buffalo.edu/search.php). The species-conserved regions for the SNPs were defined using the UCSC Genome browser (http://genome.ucsc.edu/, NCBI36/hg18).Gene ontology analysis […]


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miRdSNP institution(s)
Center for Computational Research, New York State Center of Excellence in Bioinformatics and Life Sciences, State University of New York at Buffalo, Buffalo, NY, USA

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