|Interface||Command line interface|
|Restrictions to use||None|
|Input data||A miRNA sequence|
|License||GNU General Public License version 2.0|
No version available
Publication for MiRdup
Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz) Using Next Generation Sequencing (NGS)
[…] predicted using a hidden hierarchical markov model (hhmmir) , which allows de novo prediction of micrornas using hidden markov hierarchical models. these results were validated using mipred  and mirdup  tools, with which respectively we distinguished the real pre-mirnas from other hairpin sequences with similar stem-loops and predicted the location of micrornas in their pre-mirna. plant […]
Improving classification of mature microRNA by solving class imbalance problem
[…] problem should be also considered as imbalance class distribution. several computational methods which have been developed for mature mirnas classification include maturebyes, mirmat, mirrim2, mirdup, maturepred, mirpara, mirexplorer, matpred and mirduplexsvm. these methods mainly focus on the use of machine learning techniques, and their lower predictive performance suffers […]
It does two things: predict the most probable location of a mature miRNA on a submitted pre-miRNA. And check if a submitted miRNA is compatible with a submitted pre-miRNA.
Very useful to verify pre-miRNAs prediction tools results !