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Associated diseases

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MiRdup specifications

Information


Unique identifier OMICS_00404
Name MiRdup
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A miRNA sequence
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes

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Publication for MiRdup

MiRdup in publications

 (2)
PMCID: 4961369
PMID: 27459734
DOI: 10.1371/journal.pone.0159825

[…] predicted using a hidden hierarchical markov model (hhmmir) [], which allows de novo prediction of micrornas using hidden markov hierarchical models. these results were validated using mipred [] and mirdup [] tools, with which respectively we distinguished the real pre-mirnas from other hairpin sequences with similar stem-loops and predicted the location of micrornas in their pre-mirna. plant […]

PMCID: 4867574
PMID: 27181057
DOI: 10.1038/srep25941

[…] problem should be also considered as imbalance class distribution. several computational methods which have been developed for mature mirnas classification include maturebyes, mirmat, mirrim2, mirdup, maturepred, mirpara, mirexplorer, matpred and mirduplexsvm. these methods mainly focus on the use of machine learning techniques, and their lower predictive performance suffers […]

MiRdup institution(s)
School of Computer Science and McGill Centre for Bioinformatics, McGill University, Montreal, QC, Canada; Laboratoire de bioinformatique du département informatique, Université du Québec À Montréal, Montreal, QC, Canada

MiRdup reviews

 (2)
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Anonymous user #164

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Desktop
Great tool, good accuracy
Anonymous user #163's avatar image No country

Anonymous user #163

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Desktop
Nice program.
It does two things: predict the most probable location of a mature miRNA on a submitted pre-miRNA. And check if a submitted miRNA is compatible with a submitted pre-miRNA.
Very useful to verify pre-miRNAs prediction tools results !