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MiRdup

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A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier trained with experimentally validated miRNAs from miRbase, with features that characterize the miRNA-miRNA* duplex.

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2 user reviews

2 user reviews

Josh's avatar image

Josh

Nice program.
It does two things: predict the most probable location of a mature miRNA on a submitted pre-miRNA. And check if a submitted miRNA is compatible with a submitted pre-miRNA.
Very useful to verify pre-miRNAs prediction tools results !

Friedman's avatar image

Friedman

Great tool, good accuracy

MiRdup forum

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MiRdup classification

MiRdup specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Input data:
A miRNA sequence
License:
GNU General Public License version 2.0
Version:
1.4
Maintained:
Yes

MiRdup distribution

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No versioning.

Credits

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Publications

Institution(s)

School of Computer Science and McGill Centre for Bioinformatics, McGill University, Montreal, QC, Canada; Laboratoire de bioinformatique du département informatique, Université du Québec À Montréal, Montreal, QC, Canada

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