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MiRdup specifications
Information
| Unique identifier | OMICS_00404 |
|---|---|
| Name | MiRdup |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A miRNA sequence |
| Operating system | Unix/Linux |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.4 |
| Stability | Stable |
| Maintained | Yes |
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Publication for MiRdup
MiRdup in publications
(2)[…] predicted using a hidden hierarchical markov model (hhmmir) [], which allows de novo prediction of micrornas using hidden markov hierarchical models. these results were validated using mipred [] and mirdup [] tools, with which respectively we distinguished the real pre-mirnas from other hairpin sequences with similar stem-loops and predicted the location of micrornas in their pre-mirna. plant […]
[…] problem should be also considered as imbalance class distribution. several computational methods which have been developed for mature mirnas classification include maturebyes, mirmat, mirrim2, mirdup, maturepred, mirpara, mirexplorer, matpred and mirduplexsvm. these methods mainly focus on the use of machine learning techniques, and their lower predictive performance suffers […]
MiRdup reviews
(2)
It does two things: predict the most probable location of a mature miRNA on a submitted pre-miRNA. And check if a submitted miRNA is compatible with a submitted pre-miRNA.
Very useful to verify pre-miRNAs prediction tools results !