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Citations per year

Number of citations per year for the bioinformatics software tool miReader

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miReader specifications


Unique identifier OMICS_11466
Name miReader
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data FASTQ or FASTA
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Ravi Shankar

Publication for miReader

miReader citation


Bioinformatic tools for microRNA dissection

Nucleic Acids Res
PMCID: 4705652
PMID: 26578605
DOI: 10.1093/nar/gkv1221

[…] S1.Several tools have been devised to predict miRNAs from NGS data. The most common are miRDeep/miRDeep2 (,) and miRanalyzer (,). Both can find previously known and novel miRNAs. Another recent tool, miReader (), identifies mature miRNAs directly from NGS read data without the need for genomic sequences or homologous references. Experimental techniques such as molecular cloning, sequencing or hybr […]

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miReader institution(s)
Studio of Computational Biology & Bioinformatics, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
miReader funding source(s)
The present work was supported by ICAR grant NFBSFARA/RNA-3022/2012-13 and CSIR 12th FYP project GENESIS BSC0121.

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