MIREAP protocols

MIREAP specifications


Unique identifier OMICS_00376
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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MIREAP IN pipeline

PMCID: 5635596
PMID: 26527651
DOI: 10.1093/gbe/evv206

[…] reads that matched perfectly to less than 30 genomic regions in the b. rapa genome were used for mirna annotation. the mapped regions were subjected to secondary hairpin structure prediction using “mireap” (http://sourceforge.net/projects/mireap/, last accessed november 04, 2015). the predicted structures with less than −18 kcalmol−1 free energy, less than 300 nt spaces between the mirna […]

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