miREval protocols

View miREval computational protocol

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miREval specifications

Information


Unique identifier OMICS_00378
Name miREval
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Publications for miREval

miREval in pipelines

 (2)
2013
PMCID: 4608865
PMID: 26484050
DOI: 10.1016/j.gdata.2013.06.001

[…] maximal mismatches of 2 & 3 respectively against its homolog (). the length of the two est is 611 nt and 592 nt while the precursor's length is 80 nt and 100 nt respectively as identified by mireval software. the mature mirna sequences are located at the 3′ end of the mirna precursors. minimal folding free energy (mfe) is an important characteristic that determines the secondary […]

2012
PMCID: 3338703
PMID: 22558167
DOI: 10.1371/journal.pone.0035561

[…] of putative mirna precursors in ngfr introns cid-mirna was used along with the prediction of dorsha processing sites using microprocessor svm (https://demo1.interagon.com/mirna/) program . mireval (http://tagc.univ-mrs.fr/mireval/) and mirbase (http://www.mirbase.org/index.shtml) databases were also used to determine the degree of conservation of mir-6165 and its precursor sequence […]


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miREval in publications

 (11)
PMCID: 4969525
PMID: 27517048
DOI: 10.1155/2016/7562085

[…] however, hsa-mir-663 was not found in its1 but 5′ ets of rna45s. this discrepancy may be caused by the differences in detection tool or the version of rna45s sequence data. for instance, they used mireval web tool for sequence analysis and their study probably may be based on the older version of rrna sequence data., we also discovered that almost all of these rmirnas formed stem-loop […]

PMCID: 4515495
PMID: 26247021
DOI: 10.1155/2015/434623

[…] cosmetic gadgetry in years to come., the ansm (project throughskin) is acknowledged for financial support. the authors would like to thank the slaughterhouse of pézenas, france, kocel kouril sarl, mireval, france, and also mrs. chantal cazevieille in the electron microscopy service, montpellier rio imaging, saint eloi hospital, montpellier, france. this work used samples of human skin […]

PMCID: 4324738
PMID: 25695052
DOI: 10.1155/2015/206382

[…] mirna candidate sequences were scanned to find out real versus false mirna. three types of software were used for proper identification of mirna. these types of software are mipred, miralign, and mireval., mipred. the mipred web server (http://www.bioinf.seu.edu.cn/mirna/) was used to distinguish the real pre-mirna from other hairpin sequences with similar stem-loops (pseudo pre-mirna); […]

PMCID: 4007588
PMID: 24620741
DOI: 10.1186/1742-4690-11-23

[…] methods, the architecture and secondary structure of the entire hiv-1 rna genome have been clarified [], which makes the prediction of hiv-1-encoded mirna(s) more accurate. with the online software mireval (http://mimirna.centenary.org.au/mireval/), we predicted nine putative hiv-1-encoded mirnas including the tar region-derived mirna which was reported previously (data not shown) []. however, […]

PMCID: 3893244
PMID: 24454911
DOI: 10.1371/journal.pone.0085653

[…] details , ). novel sequences were confirmed for the presence of mirna structures by using computational identification of microrna (cid, center for computational biology and bioinformatics) and mireval (http://tagc.univ-mrs.fr/mireval) . the mfold web server (http://mfold.rit.albany.edu/?q=mfold/rna-folding-form) was used to obtain for rna secondary structures ., nefl mrna 3′utr […]


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miREval institution(s)
Bioinformatics Laboratory, Centenary Institute, University of Sydney, Sydney, New South Wales, Australia; Gene and Stem Cell Therapy Program, Centenary Institute, University of Sydney, Sydney, New South Wales, Australia; Cell and Molecular Therapies, Royal Prince Alfred Hospital, Camperdown, New South Wales, Australia
miREval funding source(s)
Australian National Health and Medical Research Council [Training Fellowship 571156], Cancer Institute NSW [career Development Fellowship 12/CDF/2-28], Cancer Council NSW [Project Grant 1006260], the Rebecca L. Cooper Foundation and the Cell and Gene Trust [Cure The Future]

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