miREvo specifications

Information


Unique identifier OMICS_00406
Name miREvo
Software type Pipeline/Workflow
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2
Stability Stable
Requirements RNAfold, Bowtie, BioPerl, mafsInRegion, BLAT
Maintained Yes

Taxon


  • Animals
  • Plants

Versioning


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Documentation


Maintainer


  • person_outline Ming Wen <>

miREvo article

miREvo citations

 (2)
2018
PMCID: 5948824

[…] using bowtie [20] with no mismatches permitted, and the locations were used to identify known mirnas. novel mirnas were predicted using the applications mirevo [21] and mirdeep2 [22]. two hundred and thirty two unique mirnas including 141 conserved mirnas and 91 novel mirnas were identified and assigned to genomic coordinates (additional¬†file¬†1: […]

2016
PMCID: 5495669

[…] clean reads were mapped duck genome database (bgi duck 1.0 reference annotation release 101) and compared with the distribution of the known mirnas. the novel mirnas were predicted by the software mirevo and mirdeep2 [17,18]. with the statistics and normalization of the expression of mirnas in two samples through transcript per million (tpm, normalization expression = […]

miREvo institution(s)
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong, China

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