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mirEX specifications


Unique identifier OMICS_16537
Name mirEX
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana
    • Hordeum vulgare


  • person_outline Wojciech Karlowski

Additional information


Publications for mirEX

mirEX citations


“The Two Brothers”: Reconciling Perceptual Cognitive and Statistical Models of Musical Evolution

Front Psychol
PMCID: 5893830
PMID: 29670551
DOI: 10.3389/fpsyg.2018.00344

[…] sting as musemes. In addition to Savage's () software, many such algorithms for segmentation and pattern-matching have been developed over recent years, often under the stimulus of the aforementioned MIREX project (Lartillot, ; Conklin, ; Velardo et al., ).The outputs of 2 above need to be processed with phylogenetic software in order to reconstruct hypothetical phylomemies of musemes and the work […]


Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs

PMCID: 5545994
PMID: 28786034
DOI: 10.1186/s12284-017-0177-y

[…] n et al., ). The expression levels of the sRNA precursors, the sRNA target genes and the target mimics could be partially uncovered by visiting PmiRKB (plant microRNA knowledge base) (Meng et al., ), mirEX (Arabidopsis pri-miRNA expression atlas) (Bielewicz et al., ), AVT (AtGenExpress visualization tool) (Kilian et al., ; Goda et al., ), and Arabidopsis eFP Browser (Winter et al., ). The biologic […]


Serum levels of environmental pollutants is a risk factor for breast cancer in Inuit: a case control study

PMCID: 5470290
PMID: 28610584
DOI: 10.1186/s12940-017-0269-6

[…] -like PCBs): PCB 105, 118, 128, 138, 156, 170, 4) ∑PCB group 3 (CYP1A1 and CYP2B inducing PCBs): PCB 99, 153, 180, 183, 5) ∑DL-PCBs (dioxin-like PCBs): PCB 105, 118, 156, 6) ∑OCP: p,p′-DDT, p,p′-DDE, mirex, β-HCH, HCB, cis- and trans-nonachlor, and oxychlordane, 7) ∑PFCA: PFHpA, PFOA, PFNA, PFDA, PFUnA, PFDoA and PFTrA, 8) ∑PFSA: PFHxS, PFOS and PFOSA, and 9) ∑PFAA: ∑PFCA + ∑PFSA. For sum calculat […]


Associations between Prenatal Exposure to Polychlorinated Biphenyls and Neonatal Thyroid Stimulating Hormone Levels in a Mexican American Population, Salinas Valley, California

Environ Health Perspect
PMCID: 2022659
PMID: 17938741
DOI: 10.1289/ehp.9843

[…] pounds including o,p′-dichlorodiphenyltrichloroethane (DDT), p,p′-DDT, p,p′-dichlorodiphenyl-trichloroethylene (DDE), β- and γ-hexachloro-cyclohexane, dieldrin, hexachlorobenzene, heptachlor epoxide, mirex, oxychlordane, and trans-nonachlor. Organochlorine compounds were measured concurrently with PCBs using the method described above and were lipid-adjusted. We determined exposure to organophosph […]


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mirEX funding source(s)
This work was supported by grants from the National Science Centre: 2011/03/B/NZ2/01416, 2011/03/N/NZ2/01440, 2012/04/M/NZ2/00127, 2011/03/N/NZ2/03147, 2012/05/N/NZ2/00880, 2012/05/N/NZ2/00955, 2013/10/A/NZ1/00557, 2014/12/T/NZ2/00246, and 0028/B/P/1/2009/37, by PhD fellowships (part of the International PhD Program titled “From genome to phenotype: a multidisciplinary approach to functional genomics” (MPD/2013/7 and MPD/2013/3) funded by the Foundation for Polish Science (FNP)), by a scholarship holder within the START 2014 program of the Foundation for Polish Science (FNP), by the European Regional Development Fund through the Innovative Economy for Poland 2007-2013, project WND-POIG.01.03.01-00-101/08 POLAPGEN-BD “Biotechnological tools for breeding cereals with increased resistance to drought”, and by KNOW Poznan RNA Centre, 01/KNOW2/2014, by the Parent Bridge Program of the Foundation for Polish Science (POMOST/2012-5/7).

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