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mirExplorer specifications

Information


Unique identifier OMICS_08794
Name mirExplorer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability No
Maintained No

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Publication for mirExplorer

mirExplorer in publications

 (4)
PMCID: 4867574
PMID: 27181057
DOI: 10.1038/srep25941

[…] considered as imbalance class distribution. several computational methods which have been developed for mature mirnas classification include maturebyes, mirmat, mirrim2, mirdup, maturepred, mirpara, mirexplorer, matpred and mirduplexsvm. these methods mainly focus on the use of machine learning techniques, and their lower predictive performance suffers from the class-imbalance problem. […]

PMCID: 3917882
PMID: 24516608
DOI: 10.1371/journal.pone.0088179

[…] and mirna precursor sequence-based mirna identification algorithms have been successfully developed to automatically identify mirnas from srna transcriptomes, for example, mirdeep for animals and mirexplorer for animals and plants . however, the challenge is greater in non-model organisms because of the lack of available genome data., several strategies have been proposed to resolve […]

PMCID: 3849828
PMID: 24074203
DOI: 10.1186/1471-2164-14-661

[…] first identified did not exist among the 218 bmnpv-encoded small rnas. however, nine novel potential viral mirnas were identified from among the 218 bmnpv-encoded small rnas (data not shown) using mirexplorer software [], and these should be further validated., many groups have reported finding novel small rnas derived from housekeeping non-coding rnas, such as rrnas, snornas and snrnas [,,]. […]

PMCID: 3314633
PMID: 22470567
DOI: 10.1371/journal.pone.0034394

[…] mirna transcriptomic analysis of ngs data to discover novel mirnas, including mirdeep , , , , mirdeep2 , mirdeep-p , miranalyzer , , , mirexpress , deepbase , mirtrap , mirtools , sscprofilter , , mirexplorer , and mirena . although these tools use different algorithms to predict novel mirnas, they share the same two basic principles: 1) mapping of the reads to the genome and 2) checking […]


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mirExplorer institution(s)
State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering of the Ministry of Education, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China

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