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miRFam specifications


Unique identifier OMICS_08005
Name miRFam
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages C++
Computer skills Advanced
Version 1.0
Stability Stable
Maintained No


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Publication for miRFam

miRFam citation


Comprehensive analysis of small RNA seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana

RNA Biol
PMCID: 4615835
PMID: 25629686
DOI: 10.1080/15476286.2014.996474

[…] (release november 2011), arabidopsis possesses 291 mirna precursors that generate 328 mature sequences. among them, 200 were placed into 97 different families based upon their sequence similarity (mirfam.dat of mirbase). to achieve more accurate sequence analysis, a clean and non-redundant dataset was prepared according to 2 criteria: (a) taking one precursor from each family, and (b) taking […]

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miRFam institution(s)
School of Computer Science, Fudan University, Shanghai, China

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