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OMIC
08005

miRFam

An alignment-free method to classify miRNA genes with n-grams and a multiclass SVM. miRFam uses only primary information of pre-miRNAs or mature miRNAs and a multiclass SVM, to automatically classify miRNA genes.

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Windows
Programming languages:
C++
Computer skills:
Advanced
Version:
miRFam version 1.0
Stability:
Stable
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Documentation & support

Maintainer

  • Jihong Guan <jhguan at tongji.edu.cn>

Credits

Institution(s)

School of Computer Science, Fudan University, Shanghai 200433, China

Publications

  • (Ding et al., 2011) miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM. BMC bioinformatics.
    PMID: 21619662

Classification

Literature

  • (Akhtar et al., 2016) Bioinformatic tools for microRNA dissection. Nucleic acids research.
    PMID: 26578605

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