miRge statistics

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Citations per year

Number of citations per year for the bioinformatics software tool miRge

Tool usage distribution map

This map represents all the scientific publications referring to miRge per scientific context
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miRge specifications


Unique identifier OMICS_10762
Name miRge
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Cutadapt, Bowtie, PERL GD
Maintained Yes


No version available


  • person_outline Marc Halushka

Publications for miRge

miRge citations


Current Research on Non Coding Ribonucleic Acid (RNA)

PMCID: 5748684
PMID: 29206165
DOI: 10.3390/genes8120366

[…] e regulation of the positive transcription elongation factor P-TEFb [].Many miRNA processing pipelines have been established for utilizing HTS data. The major pipelines include: Oasis [], Chimira [], miRge [], and TIGER [], etc. Several tools have also been developed to detect isomiRs such as SeqBuster [], isomiRID [] and DeAnnIso []. One tRNA detection tool, tDRMapper [], is currently available. […]


Uptake of dietary milk miRNAs by adult humans: a validation study

PMCID: 4857747
PMID: 27158459
DOI: 10.5256/f1000research.9200.r13516

[…] pooled samples, representing the five donors at time points 0, 3, 6 and 9 hours post-milk intake. Each sample had between 17.9 and 21 million total reads ( ). We analyzed the sample by three methods: miRge , Chimira release 1.0 , and direct mapping via Bowtie v1.1.2 to mature miRNAs. The percent miRNAs were between 96.6 and 99.1% for samples at T0, T6, and T9. However, at T3, the % aligned miRNAs […]

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miRge institution(s)
Department of Pathology, Johns Hopkins University SOM, Baltimore, MD, USA
miRge funding source(s)
Supported by the National Institutes of Health [1R01HL137811] and the American Heart Association [Grant-in-Aid 17GRNT33670405].

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