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The predicton of the pre-miRNA hairpin structures is an essential step in the predicton of miRNAs. However, the cubic complexity algorithms used for that can become very slow in a genome-wide scale. Mirinho was developed to solve this problem.

Software type:
Command line interface
Restrictions to use:
Operating system:
Unix/Linux, Mac OS
Computer skills:
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  • Susan Higashi <susan.higashi at inria.fr>


ERABLE team, Inria Grenoble Rhône-Alpes, Montbonnot Saint-Martin 38330, France, Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne F-69622, France and INRA, UBIA & Plateforme Bioinformatique, 24 Chemin de Borde Rouge, Auzeville, POBOX 5627, Castanet Tolosan 31326, France

  • (Higashi et al., 2015) Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data. BMC bioinformatics.
    PMID: 26022464
  • (Akhtar et al., 2016) Bioinformatic tools for microRNA dissection. Nucleic acids research.
    PMID: 26578605

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