miRlastic specifications

Information


Unique identifier OMICS_23932
Name miRlastic
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Fabian Theis
  • person_outline Nikola S. Mueller
  • person_outline Steffen Sass
  • person_outline Adriana Pitea
  • person_outline Kristian Unger

Publication for miRlastic

miRlastic citation

library_books

Maternal whole blood cell miRNA 340 is elevated in gestational diabetes and inversely regulated by glucose and insulin

2018
Sci Rep
PMCID: 5778051
PMID: 29358694
DOI: 10.1038/s41598-018-19200-9

[…] an interaction network analysis was performed. Based on miRNA-mRNA in silico target site predictions obtained from Target Scan (version 6.2) (doi:10.1016/j.cell.2004.12.035), the previously described miRlastic R approach for the identification of potential regulatory interactions between significantly regulated miRNAs and mRNAs by incorporating their expression profiles was applied. Briefly, elast […]

miRlastic institution(s)
Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany; Research Unit Radiation Cytogenetics, Helmholtz Zentrum München, Neuherberg, Germany; Clinical Cooperation Group “Personalized Radiotherapy in Head and Neck Cancer”, Helmholtz Zentrum München, Neuherberg, Germany; Department of Mathematics, Technical University of Munich, Garching, Germany
miRlastic funding source(s)
Supported by the German Federal Ministry of Education and Research (BMBF) within the framework of the e:Med research and funding concept (grant # 01ZX1313C) and the European Research Council (Latent Causes: 259294) and the Deutsche Forschungsgemeinschaft (InKoMBio: SPP 1395 (TH 900/3-2)) and (Psycourse).

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