miRmap pipeline

miRmap specifications


Unique identifier OMICS_06680
Name miRmap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Unique identifier OMICS_06680
Name miRmap
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for miRmap

miRmap IN pipelines

PMCID: 5669919
PMID: 29137293
DOI: 10.18632/oncotarget.19752

[…] usa). samples were applied to welgene biotechnology company (welgene, taipei, taiwan) for rna preparation and microarray analysis. the detailed protocol was described previously [59, 60]., mirmap is an open-source software library providing comprehensive microrna targets prediction (http://mirmap.ezlab.org/) [35]. the putative target genes can be identified based on calculating […]

PMCID: 4936332
PMID: 27429792
DOI: 10.1556/1886.2016.00015

[…] version 3.0.2., to unravel the role of differentially expressed mirnas which have not yet been reported to play a role in bacterial infection, in silico prediction was used to identify mrna targets (mirmap, mirmap score <80) [14]. the list of potential target genes was applied to the david functional annotation tool [15, 16] to identify pathways in which these potential mrna targets […]

miRmap institution(s)
Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland

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