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miRmap specifications

Information


Unique identifier OMICS_06680
Name miRmap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Unique identifier OMICS_06680
Name miRmap
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for miRmap

miRmap citations

 (71)
library_books

miR 103 Promotes Neurite Outgrowth and Suppresses Cells Apoptosis by Targeting Prostaglandin Endoperoxide Synthase 2 in Cellular Models of Alzheimer’s Disease

2018
PMCID: 5895658
PMID: 29674956
DOI: 10.3389/fncel.2018.00091

[…] genes by these following analysis: (1) target mrnas of mir-103 were first predicted by mirwalk 2.0 with six or above positive results by 12 methods (mirwalk, microt4, miranda, mirbridge, mirdb, mirmap, mirnamap, pictar2, pita, rna22, rnahybrid, targetscan, dweep et al., ); (2) genes correlated with ad pathology or risk were analyzed by disgenet, piñero et al., ); and (3) potential targeted […]

library_books

Tumor suppressing effects of microRNA 612 in bladder cancer cells by targeting malic enzyme 1 expression

2018
PMCID: 5919718
PMID: 29620192
DOI: 10.3892/ijo.2018.4342

[…] combines this information with a comparison of binding sites resulting from 12 existing mirna-target prediction programs (diana-microtv4.0, diana-microt-cds, miranda-rel2010, mirbridge, mirdb4.0, mirmap, mirnamap, dorina i.e., pictar2, pita, rna22v2, rnahybrid 2.1 and targetscan 6.2), we predicted 21 possible target genes in 7 databases (dianamt, miranda, mirdb, mirwalk pictar5, rna22 […]

library_books

Clinical significance of high expression of miR 452 5p in lung squamous cell carcinoma

2018
PMCID: 5876433
PMID: 29616113
DOI: 10.3892/ol.2018.8088

[…] mirwalk and databases associated with mirwalk (targetscan, miranda, pictar2, rnahybrid, mirdb, rna22-has, targetminer, embl-ebi, diana-microt, mirbridge, mirmap, mirnamap and pita). the target genes of mir-452-5p were searched in the pubmed (https://www.ncbi.nlm.nih.gov/pubmed) and embase (https://www.embase.com) databases using the terms: ‘cancer’, […]

library_books

Clinical significance of microRNA 449a in hepatocellular carcinoma with microarray data mining together with initial bioinformatics analysis

2018
PMCID: 5841030
PMID: 29545842
DOI: 10.3892/etm.2018.5836

[…] were predicted using mirwalk 2.0 (http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/) (), which combined 12 existing mir-target prediction programs (mirwalk, microt4, miranda, mirbridge, mirdb, mirmap, mirnamap, pictar2, pita, rna22, rnahybrid and targetscan) to provide comprehensive potential targets for mir-449a. the genes predicted in more than five prediction software programs […]

library_books

Expression level and potential target pathways of miR 1 3p in colorectal carcinoma based on 645 cases from 9 microarray datasets

2018
PMCID: 5865962
PMID: 29393467
DOI: 10.3892/mmr.2018.8532

[…] significant., as for prediction tools, mirwalk 2.0 was applied to predict the potential target genes of mir-1-3p based on 12 online databases, namely mirwalk; microt4; miranda; mirbridge; mirdb; mirmap; mirnamap; pictar; pita; rna22; rnahybrid and targetscan. for the purpose of acquiring the possible target genes of mir-1-3p as complete as possible, genes were selected on condition […]

library_books

Meta Analysis of MicroRNAs Dysregulated in the Hippocampal Dentate Gyrus of Animal Models of Epilepsy

2017
eNeuro
PMCID: 5745610
PMID: 29291240
DOI: 10.1523/ENEURO.0152-17.2017

[…] regions (utrs), and the seed sequence, with a minimum seed length of seven nucleotides. furthermore, to exclude overprediction we applied a comparative analysis by six prediction programs: mirmap, rna22, miranda, rnahybrid, pictar2, and targetscan. following this approach, a candidate mrna target has to be identified by all these programs. as we did for the mirnas, we conducted pubmed […]


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miRmap institution(s)
Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland

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