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miRmap specifications

Information


Unique identifier OMICS_06680
Name miRmap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_06680
Name miRmap
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for miRmap

miRmap citations

 (19)
call_split

MicroRNA 671 3p inhibits the development of breast cancer: A study based on in vitro experiments, in house quantitative polymerase chain reaction and bioinformatics analysis

2018
PMCID: 5919715
PMID: 29620195
DOI: 10.3892/ijo.2018.4339
call_split See protocol

[…] 0 database (zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2), which contains 12 online tools, namely Targetscan, RNAhybrid, RNA22, PITA, Pictar2, miRWalk, Microt4, miRNAMap, miRDB, mirbridge, miRanda and miRMap. Targets predicted by >3 algorithms were selected for GO functional annotation and KEGG pathway analyses using the DAVID online tool (david.ncifcrf.gov). Subsequently, the enriched results were […]

library_books

Systematic Analysis of Transcriptomic Profile of Renal Cell Carcinoma under Long Term Hypoxia Using Next Generation Sequencing and Bioinformatics

2017
Int J Mol Sci
PMCID: 5751259
PMID: 29215599
DOI: 10.3390/ijms18122657

[…] p) was upregulated and two microRNAs (hsa-mir-1306-5p, hsa-mir-193a-3p) were downregulated in both short-term and long-term hypoxia.To further identify putative target genes of microRNAs, we used the miRmap database (Available online: http://mirmap.ezlab.org/) for analysis with the criterion defined as a miRmap score ≥97.0. There were 21 putative targets of eight upregulated microRNAs (seven upreg […]

library_books

Identification of novel genes in aging osteoblasts using next generation sequencing and bioinformatics

2017
Oncotarget
PMCID: 5768349
PMID: 29371932
DOI: 10.18632/oncotarget.22748

[…] rent bioinformatics databases and tools, including Ingenuity® Pathway Analysis (IPA), Database for Annotation, Visualization and Integrated Discovery (DAVID) [], Gene Expression Omnibus (GEO) [], and miRmap [].Both OA and osteoporosis are common age-related musculoskeletal disorders. Currently, the diagnosis of OA and osteoporosis relies largely on imaging studies, and disease severity does not ne […]

library_books

Deduction of Novel Genes Potentially Involved in Osteoblasts of Rheumatoid Arthritis Using Next Generation Sequencing and Bioinformatic Approaches

2017
Int J Mol Sci
PMCID: 5713364
PMID: 29137139
DOI: 10.3390/ijms18112396

[…] e down-regulated in RA osteoblasts, compared to normal osteoblasts. To determine potential miRNA–mRNA interactions in normal and RA osteoblasts, we first analyzed putative targets of the 35 miRNAs by miRmap database, and selected targets with miRmap score of more than 99.0. The results yielded 435 targets (520 interactions) of 16 up-regulated miRNAs and 391 targets (477 interactions) of 19 down-re […]

call_split

Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon

2017
BMC Genomics
PMCID: 5648517
PMID: 29047327
DOI: 10.1186/s12864-017-4205-5
call_split See protocol

[…] as retained. Sequences for each 3′-UTR was then compiled to a multi fasta file. Based on this salmon 3′-UTR reference multi fasta file, targets for differentially expressed miRNAs were predicted with miRMap []. Expression correlation between miRNAs and miRNA targets was calculated based on expression profiles from miRNAs as well as mRNAs from the same samples: An expression profile for averaged me […]

library_books

Identification of novel gene expression signature in lung adenocarcinoma by using next generation sequencing data and bioinformatics analysis

2017
Oncotarget
PMCID: 5739604
PMID: 29285217
DOI: 10.18632/oncotarget.21022

[…] or clustering showed the expression patterns of each upregulated microRNA from these 3 pairs of specimens (Figure ). To further elucidate the genetic interactions in lung adenocarcinoma, we performed miRmap database for target prediction. Among 22 upregulated microRNAs, there were 13 putative targets, shown in the “Targets” Venn diagram (Figure ). The prediction threshold was miRmap score > 90.0. […]

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miRmap institution(s)
Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland

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