miRMOD specifications

Information


Unique identifier OMICS_18093
Name miRMOD
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Requires three input files- namely, a fasta file of miRNA sequences, a fasta file of sRNA reads and Bowtie generated alignment file.
Input format FASTA
Output data A target comparison and novel target prediction.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C#
Computer skills Medium
Version 0.4
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Dinesh Gupta <>

Additional information


Cite: Kaushik, Abhinav, et al. "miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data." PeerJ 3 (2015): e1332.

Publication for miRMOD

miRMOD institution(s)
Bioinformatics Laboratory, SCB Group, International Centre for Genetic Engineering & Biotechnology, New Delhi, India; Department of Genetics, University of Delhi, South Campus, Delhi, India
miRMOD funding source(s)
This work was supported by the Department of Biotechnology (DBT, India) grant for funding the research and Bioinformatics Infrastructure Facility (BIF) at ICGEB (BT/BI/25/001/2006 and BT/PR628/AGR/36/674/2011), a DBT-BINC fellowship and a Council for Scientific and Industrial Research (CSIR), India fellowship.

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