miRMOD specifications

Unique identifier:
OMICS_18093
Interface:
Graphical user interface
Input data:
Requires three input files- namely, a fasta file of miRNA sequences, a fasta file of sRNA reads and Bowtie generated alignment file.
Output data:
A target comparison and novel target prediction.
Programming languages:
C#
Version:
0.4
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

miRMOD distribution

download

miRMOD support

Documentation

Maintainer

  • Dinesh Gupta <>

Additional information

Cite: Kaushik, Abhinav, et al. "miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data." PeerJ 3 (2015): e1332.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Bioinformatics Laboratory, SCB Group, International Centre for Genetic Engineering & Biotechnology, New Delhi, India; Department of Genetics, University of Delhi, South Campus, Delhi, India

Funding source(s)

This work was supported by the Department of Biotechnology (DBT, India) grant for funding the research and Bioinformatics Infrastructure Facility (BIF) at ICGEB (BT/BI/25/001/2006 and BT/PR628/AGR/36/674/2011), a DBT-BINC fellowship and a Council for Scientific and Industrial Research (CSIR), India fellowship.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools