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MicroRNA enrichment software tools | RNA interference

Similar to the development of gene set enrichment and gene regulatory network analysis tools over a decade ago, microRNA enrichment tools are currently gaining importance.Source text:(Backes et al., 2016) miEAA: microRNA enrichment analysis and…
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GeneTrail
Web

GeneTrail

A web service allowing the integrated analysis of transcriptomic, miRNomic,…

A web service allowing the integrated analysis of transcriptomic, miRNomic, genomic, and proteomic datasets. GeneTrail offers multiple statistical tests, a large number of predefined reference sets,…

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miEAA
Web

miEAA miRNA Enrichment Analysis and Annotation tool

Offers a variety of commonly applied statistical tests such as…

Offers a variety of commonly applied statistical tests such as over-representation analysis and miRNA set enrichment analysis, which is similar to gene set enrichment analysis. Besides the different…

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gsa4mirna
Desktop

gsa4mirna

A gene set analysis (GSA)-type methodology for functionally interpreting miRNA…

A gene set analysis (GSA)-type methodology for functionally interpreting miRNA expression data. gsa4mirna relies on the gene set analysis paradigm which extends currently used over representation…

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miRDis
Web

miRDis microRNA Discovery

Supports the annotation and expression profiling data of known host miRNAs and…

Supports the annotation and expression profiling data of known host miRNAs and the detection of novel miRNAs, other noncoding RNAs, and the exogenous miRNAs from dietary species. miRDis is a small…

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DIANA-miRPath
Web

DIANA-miRPath

A miRNA pathway analysis web-server, providing accurate statistics, while being…

A miRNA pathway analysis web-server, providing accurate statistics, while being able to accommodate advanced pipelines. mirPath can utilize predicted miRNA targets (in CDS or 3’-UTR regions)…

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myMIR
Dataset

myMIR

Offers a dataset of 3’ -UTR and mature miRNA sequences. myMIR was built…

Offers a dataset of 3’ -UTR and mature miRNA sequences. myMIR was built thanks to a software that permit target identification. This tool overcomes the mere intersection or union of the…

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FAME
Desktop

FAME Functional Assignment of MicroRNAs via Enrichment

Uses computational target predictions to automatically infer the processes…

Uses computational target predictions to automatically infer the processes affected by human miRNAs. FAME addresses specific characteristics of miRNA regulation and is based on a compendium of…

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miRTar
Web

miRTar

An integrated resource for deciphering miRNA-target interaction networks, and…

An integrated resource for deciphering miRNA-target interaction networks, and provides a broad range of analyzing scenarios for miRNA-target interactions, including one miRNA to one gene, one miRNA…

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CORNA
Desktop

CORNA

Allows scientists to analyse gene lists in the context of microRNA–target…

Allows scientists to analyse gene lists in the context of microRNA–target predictions. CORNA can be used to test for significant associations between genes, microRNAs, pathways and gene ontology…

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miTEA
Web

miTEA miRNA Target Enrichment Analysis

A framework for miRNA target enrichment analysis. miTEA takes as input a ranked…

A framework for miRNA target enrichment analysis. miTEA takes as input a ranked list of genes and then finds miRNAs of which targets are enriched in the top of the input list. miTEA uses a novel…

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miRTrail
Web

miRTrail

Allows comprehensive analyses of interactions of genes and miRNAs based on…

Allows comprehensive analyses of interactions of genes and miRNAs based on expression profiles. miRTrail carries out gene sets analysis, analysis of miRNA sets as well as the combination of both in a…

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miSEA
Web

miSEA microRNA Set Enrichment Analysis

A web-based tool for evaluating the enrichment of relevant microRNA sets from…

A web-based tool for evaluating the enrichment of relevant microRNA sets from microarray and miRNA-seq experiments on paired samples, e.g. control vs. treatment: In addition to a group of previously…

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miRSystem
Dataset

miRSystem

A web-based system for converting queried miRNAs to the latest annotation and…

A web-based system for converting queried miRNAs to the latest annotation and predicting the function of miRNA by integrating miRNA target gene prediction and function/pathway analyses. First,…

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TAM
Web

TAM Tool for Annotations of MiRNAs

A method for annotations of meaningful human miRNAs categories. We first…

A method for annotations of meaningful human miRNAs categories. We first integrated miRNAs into various meaningful categories according to prior knowledge, such as miRNA family, miRNA cluster, miRNA…

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MISIM
Web

MISIM miRNA similarity

A method for measuring miRNA functional similarity and construction of miRNA…

A method for measuring miRNA functional similarity and construction of miRNA functional networks based on the miRNA–disease association data and disease directed acyclic graph (DAG). MISIM allows…

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