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miRNA mappers (small RNA-seq analysis)

miRNA mappers for small RNA-seq analysis.

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Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

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SOAP
Desktop

SOAP Short Oligonucleotide Analysis Package

Aligns short reads with a reference sequence. SOAP can find all alignments with…

Aligns short reads with a reference sequence. SOAP can find all alignments with k mismatches, where k is chosen from 0 to 3. When aligning length-100 reads with the human genome, SOAP is the first…

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SHRiMP
Desktop

SHRiMP SHort Read Mapping Program

Allows to align genomic reads against a target genome. SHRiMP primarily targets…

Allows to align genomic reads against a target genome. SHRiMP primarily targets mapping accuracy, enabling the alignment of reads with extensive polymorphism and sequencing errors. The software…

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SRMA
Desktop

SRMA Short Read Micro re-Aligner

A post-alignment micro re-aligner for next-generation high throughput…

A post-alignment micro re-aligner for next-generation high throughput sequencing data.

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MicroRazerS
Desktop

MicroRazerS

Maps small RNAs onto a reference genome. MicroRazerS is a special version of…

Maps small RNAs onto a reference genome. MicroRazerS is a special version of the short read mapping tool RazerS. The software employs the gapped q-gram method in conjunction with the Swift…

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Tailor
Desktop

Tailor

A computational framework driven by an efficient and accurate aligner…

A computational framework driven by an efficient and accurate aligner specifically designed for capturing the tailing events directly from the alignments without extensive post-processing. The…

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sRNAnalyzer
Desktop

sRNAnalyzer

Identifies bacterial species from sample. sRNAnalyzer is a customizable small…

Identifies bacterial species from sample. sRNAnalyzer is a customizable small RNA analysis pipeline for next generation sequencing (NGS) data. It uses a dataset of plasma samples from CRC patients to…

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sRNA mapper
Web

sRNA mapper

Aligns sRNA onto a list of genes submitted by users. sRNA mapper is able to…

Aligns sRNA onto a list of genes submitted by users. sRNA mapper is able to retrieve matching sRNAs by querying the input gene sequence against the selected sRNAdb(s). It returns a sRNA mapping…

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