miRNAfe specifications

Information


Unique identifier OMICS_14663
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data The RNA sequences and the selected features.
Input format FASTA
Output data A comma-separated-value file with the extracted features, a SVM-based prediction.
Output format TXT, CSV
Programming languages MATLAB
Computer skills Basic
Version 0.9
Stability Stable
Maintained Yes

Maintainer


Information


Unique identifier OMICS_14663
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data The RNA sequences, a configuration file written in yaml containing folding options, alignment parameters to make phylogenetic related 200 tests, a list of features to extract, and a post-process options such as normalization or sequence filtering by minimum free energy.
Input format FASTA
Output data A comma-separated-value file with the extracted features and a SVM-based prediction.
Output format TXT, CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.90
Stability Stable
Requirements Vienna RNA, ClustalΩ, PHAST, Bowtie
Maintained Yes

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miRNAfe article

miRNAfe institution(s)
Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina; Instituto de Investigaciones en Microbiologia y Parasitologia Médica (UBA), CONICET, Paraguay, Buenos Aires, Argentina
miRNAfe funding source(s)
This work was supported by National Scientific and Technical Research Council (PIP 2013 117), National University of Litoral (CAI+D 2011 548) and Agencia Nacional de Promocion Cientifica y Tecnologica (ANPCyT) (PICT 2014 280 2627).

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