miRNAFold specifications

Information


Unique identifier OMICS_12074
Name miRNAFold
Interface Web user interface
Restrictions to use None
Input data The input of miRNAFold is a genomic sequence in a FASTA or multi-FASTA format. There are several parameters that are provided with default values and can be modified by users. We have two types of parameters: (i) those relying on pre-miRNA general characteristics and (ii) those specific to the algorithm.
Input format FASTA
Output data The web server gives as output the set of predicted pre-miRNAs. The sequence, position, size, thermodynamic property and hairpin structure for each pre-miRNA candidate are provided. The structure is represented in a bracket format and is visualized with Forna.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Fariza Tahi <>

Information


Unique identifier OMICS_12074
Name miRNAFold
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Fariza Tahi <>

Publications for miRNAFold

miRNAFold institution(s)
IBISC—IBGBI, Université Evry, Genopole, Evry, France; Institute of Plant Sciences Paris Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France
miRNAFold funding source(s)
UEVE; Council of Essonne Region

miRNAFold review

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Pradyumna

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Web
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