miRNAKey specifications

Unique identifier:
OMICS_00364
Interface:
Command line interface, Graphical user interface
Input format:
FASTA, FASTQ
Output format:
SAM, FASTQ, FASTA
Computer skills:
Advanced
Requirements:
Java, Burrows-Wheeler Alignment Tool, Fastx-Toolkit, the following Perl modules : Math, Spreadsheet, Getopt, GD
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
Differential expression table (excel table), summary report, plots of post-clipping read lengths, plots of multiple-alignment rates, clipped sequence files (adaptor clipped), mapped files and sequence files, separated to mapped and non-mapped reads.
Operating system:
Unix/Linux, Mac OS
Stability:
Stable
Maintained:
Yes

versioning

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miRNAKey distribution

download

miRNAKey support

Maintainers

  • Noam Shomron <>
  • miRNAKey Team <>

Additional information

http://ibis.tau.ac.il/miRNAkey/man.html

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Publications

Institution(s)

Department of Cell and Developmental Biology, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, Israel; The Academic College of Tel-Aviv-Yaffo, Tel-Aviv, Israel; International Computer Science Institute, Berkeley, CA, USA; School of Computer Science and Department of Molecular Microbiology and Biotechnology, George Wise Faculty of Life Science, Tel-Aviv University, Tel-Aviv, Israel

Funding source(s)

Supported by Chief Scientist Office, Ministry of Health, Israel, The Kurz-Lion Foundation, The Tel Aviv University, Faculty of Medicine, Schreiber Foundation; The Wolfson Family Charitable Fund, Israeli Science Foundation (04514831), the National Science Foundation (IIS-071325412); Faculty fellow of the Edmond Safra Bioinformatics program at Tel-Aviv University, Edmond Safra Bioinformatics Program at Tel Aviv University and the Israeli Science Foundation (04514831).

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