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Protocols

miRNAMap specifications

Information


Unique identifier OMICS_26723
Name miRNAMap
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio
    • Gallus gallus
    • Xenopus tropicalis

Maintainer


  • person_outline Hsien-Da Huang

Publication for miRNAMap

miRNAMap citations

 (21)
call_split

Meta Analysis of miRNAs and Their Involvement as Biomarkers in Oral Cancers

2018
Biomed Res Int
PMCID: 5817319
PMID: 29516011
DOI: 10.1155/2018/8439820
call_split See protocol

[…] urthermore, miRNAs involved in OC were selected based on the following criteria: (1) cell-free salivary miRNA, and (2) involvement in oral cancer. Secondary structures of these miRNAs were taken from miRNAMap. Expression of genes involved in oral cancer from different types of experiments was analyzed by geo2R (http://www.ncbi.nlm.nih.gov/geo/). After the analysis, the gene expression data of each […]

call_split

The putative tumor suppressor microRNA 30a 5p modulates clear cell renal cell carcinoma aggressiveness through repression of ZEB2

2017
PMCID: 5520909
PMID: 28569782
DOI: 10.1038/cddis.2017.252
call_split See protocol

[…] The expression profile of miR-30a-5p in different tissues was obtained from the miRNAMap database. Putative miR-30a-5p targets were predicted using miRWalk 2.0 and the microRNA.org database., The KIRC patient clinical and RNA-Seq data were from TCGA and downloaded from the Broad […]

library_books

Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis

2017
PMCID: 5467562
PMID: 28605770
DOI: 10.1093/database/bax030

[…] ry Fibrosis’ category, but not all of the pulmonary fibrosis diseases are idiopathic.There are other databases that contain curated information from the literature on miRNAs—miRBase (), miRecords (), miRNAmap () and TarBase ()—and some resources that incorporate gene ontology annotations or diseases—miRGator (), mir2Disease () and miRWalk (); however, in general, annotations related to respiratory […]

library_books

Roles of mitochondrial transcription factor A and microRNA 590 3p in the development of colon cancer

2016
PMCID: 5355708
PMID: 27878255
DOI: 10.3892/mmr.2016.5955

[…] As from humans, mice and rats, detailing their predicted and validated binding sites on their target genes. MiRWalk summarized the predition frequencies in Microt4, miRanda, miRBridge, miRDB, miRMap, miRNAMap, PicTar2, PITA, RNA22, RNAhybrid and TargetScan and the output was a score. Subsequently, miR-590-3p was selected for further study due to its high prediction score. As predicted, the present […]

library_books

Association of MicroRNA 196a2 Variant with Response to Short Acting β2 Agonist in COPD: An Egyptian Pilot Study

2016
PLoS One
PMCID: 4820109
PMID: 27043015
DOI: 10.1371/journal.pone.0152834

[…] common variant exists in the passenger strand of miR-196a2; . We found that this SNP in pre-miR196a2 had no dramatic effect on its secondary structure computed based on the minimum free energy using miRNAMap 2.0 (http://mirnamap.mbc.nctu.edu.tw/) and RNAfold server. In addition, comparative functional analysis between predicted target gene sets in wild and mutant variants using miRmut2Go browser […]

library_books

ncRNA orthologies in the vertebrate lineage

2016
PMCID: 4792531
PMID: 26980512
DOI: 10.1093/database/bav127

[…] hin intronic regions (, ) and the observation that this positioning has been conserved during mammalian evolution (). lists the possible target genes of these miRNAs using two independent databases: miRNAmap2.0 () and miRNA (www.miRNA.org). Incidentally, the list of target genes contains many transcriptional regulators including several zinc finger proteins such as PRDM2, ZNRF2 and ZNF512 as well […]

Citations

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miRNAMap institution(s)
Institute of Bioinformatics, National Chiao Tung University, Hsin-Chu, Taiwan; Institute of Biotechnology in Medicine, National Yang-Ming University, Taipei, Taiwan; Molecular Medicine Research Center, Chang Gung University, Tao-Yuan, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsin-Chu, Taiwan; Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-Chu, Taiwan
miRNAMap funding source(s)
Supported by the National Science Council of the Republic of China under Contract No. NSC 96-3112-B-009- 002, and by MOE ATU.

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