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Protocols

miRNAmeConverter specifications

Information


Unique identifier OMICS_13287
Name miRNAmeConverter
Interface Web user interface
Restrictions to use None
Input data miRNA names
Input format TXT
Output data Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Programming languages R
Computer skills Basic
Version 1.1.3
Stability Stable
Maintained Yes

Maintainer


  • person_outline Stefan J. Haunsberger

Information


Unique identifier OMICS_13287
Name miRNAmeConverter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data miRNA names
Input format TXT
Output data Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.2.0
Stability Stable
Requirements
miRBaseVersions.db
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Stefan J. Haunsberger

Publication for miRNAmeConverter

miRNAmeConverter citations

 (2)
library_books

Association of miR 548c 5p, miR 7 5p, miR 210 3p, miR 128 3p with recurrence in systemically untreated breast cancer

2018
Oncotarget
PMCID: 5823652
PMID: 29507672
DOI: 10.18632/oncotarget.24088

[…] ric) were retrieved from the European Phenome-Genome Archive (https://www.ebi.ac.uk/ega/home) after access was granted by the Metabric consortium [, , ]. For consistent miR nomenclature the R-package miRNAmeConverter was applied and MIMAT numbers were used as identifier in subsequent analysis []. […]

call_split

Cerebrospinal fluid microRNAs are potential biomarkers of temporal lobe epilepsy and status epilepticus

2017
Sci Rep
PMCID: 5468228
PMID: 28607431
DOI: 10.1038/s41598-017-02969-6
call_split See protocol

[…] roRNA was carried out with the R glm package using the normalised expression of microRNAs from qRT-PCR experiments as independent variable, and TLE or SE status as the dependent variable. We used the miRNAmeConverter Bioconductor package, to convert microRNA names from the miRBase V14 (used on the OpenArray platform) to miRBase V21. […]


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miRNAmeConverter institution(s)
Centre for Systems Medicine, Department of Physiology & Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland
miRNAmeConverter funding source(s)
This work was supported by the Science Foundation Ireland research grants 12/COEN/18-Joint Programming in Neurodegenerative Disorders, COEN-Phase II, ‘Neuro-miR’ and 13/IA/1881.

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