Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

miRNAmeConverter

An R package developed for handling naming challenges of mature miRNAs. miRNAmeConverter delivers results in a fast and transparent way. Its main functions are to check for validity of mature miRNA names, to determine the most likely miRBase version of a given set of miRNAs and to translate mature miRNA names to different versions (including sequences). A web interface enables users less familiar with R to translate miRNA names given in form of a list or embedded in text and download of the results.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

miRNAmeConverter forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

miRNAmeConverter classification

miRNAmeConverter specifications

Interface:
Web user interface
Input data:
miRNA names
Output data:
Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Input format:
TXT
Programming languages:
R
Version:
1.1.3
Maintained:
Yes

miRNAmeConverter distribution

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

miRNAmeConverter forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

miRNAmeConverter classification

miRNAmeConverter specifications

Software type:
Package/Module
Restrictions to use:
None
Input format:
TXT
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Version:
1.2.0
Requirements:
miRBaseVersions.db
Interface:
Command line interface
Input data:
miRNA names
Output data:
Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

miRNAmeConverter distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

download

miRNAmeConverter support

Documentation

Maintainer

  • Stefan J. Haunsberger <>
  • Stefan J. Haunsberger <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Centre for Systems Medicine, Department of Physiology & Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland

Funding source(s)

This work was supported by the Science Foundation Ireland research grants 12/COEN/18-Joint Programming in Neurodegenerative Disorders, COEN-Phase II, ‘Neuro-miR’ and 13/IA/1881.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.