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miRNAmeConverter

An R package developed for handling naming challenges of mature miRNAs. miRNAmeConverter delivers results in a fast and transparent way. Its main functions are to check for validity of mature miRNA names, to determine the most likely miRBase version of a given set of miRNAs and to translate mature miRNA names to different versions (including sequences). A web interface enables users less familiar with R to translate miRNA names given in form of a list or embedded in text and download of the results.

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miRNAmeConverter forum

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miRNAmeConverter classification

miRNAmeConverter specifications

Interface:
Web user interface
Input data:
miRNA names
Output data:
Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Input format:
TXT
Programming languages:
R
Version:
1.1.3
Maintained:
Yes

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miRNAmeConverter versioning

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miRNAmeConverter classification

miRNAmeConverter specifications

Software type:
Package/Module
Restrictions to use:
None
Input format:
TXT
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Version:
1.2.0
Requirements:
miRBaseVersions.db
Source code URL:
https://github.com/Bioconductor-mirror/miRNAmeConverter/tree/release-3.4
Interface:
Command line interface
Input data:
miRNA names
Output data:
Corresponding miRNA names for each database version, miRNA sequences, miRNA descriptions
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

miRNAmeConverter support

Documentation

Maintainer

  • Stefan J. Haunsberger <>
  • Stefan J. Haunsberger <>

Credits

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Publications

Institution(s)

Centre for Systems Medicine, Department of Physiology & Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland

Funding source(s)

This work was supported by the Science Foundation Ireland research grants 12/COEN/18-Joint Programming in Neurodegenerative Disorders, COEN-Phase II, ‘Neuro-miR’ and 13/IA/1881.

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