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miRNAminer specifications


Unique identifier OMICS_00409
Name miRNAminer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for miRNAminer

miRNAminer citations


Studying the System Level Involvement of MicroRNAs in Parkinson's Disease

PLoS One
PMCID: 3972105
PMID: 24690883
DOI: 10.1371/journal.pone.0093751

[…] d . This includes the homologous miRs, related to each other by descent from a common ancestral DNA sequence, that are either included in miRbase v.16 or were identified by a full cross-search using miRNAminer . For a total of 49 species, the conservation scores are available for more than 2,300 miRs within a range of 0 to 1. The 9 novel IR hubs and the 14 co-expressed miR hubs were both analyzed […]


A framework for automated enrichment of functionally significant inverted repeats in whole genomes

BMC Bioinformatics
PMCID: 3026368
PMID: 20946604
DOI: 10.1186/1471-2105-11-S6-S20

[…] endently, 15% of miRNAs are expressed in clusters, and 25% are in introns [].If an RNA is functionally significant, then the structure and sequence are conserved over the generations. A method called miRNAminer [] searches for such evolutionarily related miRNA sequences from different species (homologs). Given a query miRNA, candidate homologs from different species are tested for secondary struct […]


An Evolutionary Perspective of Animal MicroRNAs and Their Targets

PMCID: 2743850
PMID: 19759918
DOI: 10.1155/2009/594738

[…] Ensembl: http://www.ensembl.orgGenBank: http://www.ncbi.nlm.nih.govmiRBase: http://microrna.sanger.ac.uk/miRNAminer: http://groups.csail.mit.edu/pag/mirnaminermiRviewer: http://people.csail.mit.edu/akiezun/miRviewerPatrocles: http://www.patrocles.org/TargetRank: http://hollywood.mit.edu/targetrankTargetS […]


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miRNAminer institution(s)
Massachusetts Institute of Technology, Cambridge, MA, USA

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