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miRNAminer specifications

Information


Unique identifier OMICS_00409
Name miRNAminer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for miRNAminer

miRNAminer citations

 (3)
library_books

Studying the System Level Involvement of MicroRNAs in Parkinson's Disease

2014
PLoS One
PMCID: 3972105
PMID: 24690883
DOI: 10.1371/journal.pone.0093751

[…] d . This includes the homologous miRs, related to each other by descent from a common ancestral DNA sequence, that are either included in miRbase v.16 or were identified by a full cross-search using miRNAminer . For a total of 49 species, the conservation scores are available for more than 2,300 miRs within a range of 0 to 1. The 9 novel IR hubs and the 14 co-expressed miR hubs were both analyzed […]

library_books

A framework for automated enrichment of functionally significant inverted repeats in whole genomes

2010
BMC Bioinformatics
PMCID: 3026368
PMID: 20946604
DOI: 10.1186/1471-2105-11-S6-S20

[…] endently, 15% of miRNAs are expressed in clusters, and 25% are in introns [].If an RNA is functionally significant, then the structure and sequence are conserved over the generations. A method called miRNAminer [] searches for such evolutionarily related miRNA sequences from different species (homologs). Given a query miRNA, candidate homologs from different species are tested for secondary struct […]

library_books

An Evolutionary Perspective of Animal MicroRNAs and Their Targets

2009
PMCID: 2743850
PMID: 19759918
DOI: 10.1155/2009/594738

[…] Ensembl: http://www.ensembl.orgGenBank: http://www.ncbi.nlm.nih.govmiRBase: http://microrna.sanger.ac.uk/miRNAminer: http://groups.csail.mit.edu/pag/mirnaminermiRviewer: http://people.csail.mit.edu/akiezun/miRviewerPatrocles: http://www.patrocles.org/TargetRank: http://hollywood.mit.edu/targetrankTargetS […]

Citations

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miRNAminer institution(s)
Massachusetts Institute of Technology, Cambridge, MA, USA

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