miRNApath statistics

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Associated diseases

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miRNApath specifications

Information


Unique identifier OMICS_00787
Name miRNApath
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.40.0
Stability Stable
Requirements
methods, R(>=2.7.0)
Maintained Yes

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Documentation


miRNApath in publications

 (5)
PMCID: 5741757
PMID: 29273769
DOI: 10.1038/s41598-017-18128-w

[…] the three-spined stickleback genome as a reference for searching for enriched go terms. the single ranked test was conducted., for the mirna target enrichment analysis, we used bioconductor, package mirnapath (version 1.34.0). we specifically considered only potential target genes which had detectable transcription (mean normalized transcription level between samples had to be at least 10 reads […]

PMCID: 5698474
PMID: 29162853
DOI: 10.1038/s41598-017-15607-y

[…] both breast cancer tissues and cancer cell lines.figure 1 , to further understand molecular mechanism of mir-152 in breast cancer cells, several well-developed mirna algorithms, such as targetscan, mirnapath, and targetsearch, were employed to obtain a list of possible mrna targets of mir-152. as a potential mir-152 binding site was predicted within the 3′-utr of β-catenin mrna, we constructed […]

PMCID: 4705652
PMID: 26578605
DOI: 10.1093/nar/gkv1221

[…] to each putative target site. by combining the predictions with pathway analysis, it proposes functions of specific mirnas in nervous system development, intercellular communication and cell growth. mirnapath () is an online database that uses mirna target genes to link mirnas to metabolic pathways. additionally, it provides five search services and a download area. there is a specific input […]

PMCID: 2951895
PMID: 20949028
DOI: 10.1371/journal.pone.0013205

[…] and the expression of each mature mirna was normalized by total read count . graphical analysis was performed using genepattern10. the mirna–biological process relationships were predicted using mirnapath (http://lgmb.fmrp.usp.br/mirnapath/tools.php)., biopsy samples of gastric cardia tissues were collected from 10 healthy patients. after collection, the samples were immediately processed […]

PMCID: 2792220
PMID: 19948051
DOI: 10.1186/1471-2474-10-148

[…] by several computational algorithms (computational programs: http://www.microrna.org, http://www.targetscan.org, http://pictar.mdc-berlin.de, http://cbio.mskcc.org and http://lgmb.fmrp.usp.br/mirnapath) which utilize distinct parameters to predict the probability of a functional mirna binding site within the 3'-utr sequence of a given mrna. all five computational programs predicted […]


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