miRNASNP protocols

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miRNASNP specifications

Information


Unique identifier OMICS_09980
Name miRNASNP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability No
Maintained No

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This tool is not available anymore.

Publications for miRNASNP

miRNASNP in pipelines

 (3)
2018
PMCID: 5760646
PMID: 29317647
DOI: 10.1038/s41598-017-17518-4

[…] hiwi2 gene and due to its position it may affect mrna stability or may alter the binding affinity of regulatory mirnas., we used several databases including, mirbase (http://microrna.sanger.ac.uk), mirnasnp (http://www.bioguo.org/mirnasnp/index.php), microsniper http://vm24141.virt.gwdg.de/services/microsniper/index.php), targetscan (http:// targetscan.org/vert_71/) in order to predict mirnas […]

2017
PMCID: 5527106
PMID: 28743860
DOI: 10.1038/s41467-017-00108-3

[…] http://www.broadinstitute.org/mammals/haploreg/haploreg_v3.php , gwas catalogue, http://www.ebi.ac.uk/gwas/ , sift, http://sift.jcvi.org/ , polyphen-2, http://genetics.bwh.harvard.edu/pph2/ , mirnasnp v2, http://www.bioguo.org/mirnasnp/ , polymirts v3, http://compbio.uthsc.edu/mirsnp/search.php , mirbase http://www.mirbase.org/ , targetscan v7.1, http://www.targetscan.org/vert_71/ , ucsc […]

2017
PMCID: 5579249
PMID: 28860459
DOI: 10.1038/s41598-017-10207-2

[…] system to test the possible impact of these snps on the regulation of gene expression mediated by mirnas, as previously described. the prediction tools funcpred, mirwalk, mirsnp, mrsnp, mirdsnp, mirnasnp and rnahybrid were used to select mirnas which binding sites in plcb1 is potentially affected by these snps. we chose the best predictions for each snp: for rs1047383, hsa-mir-124-1, […]


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miRNASNP in publications

 (50)
PMCID: 5932181
PMID: 29755505
DOI: 10.3389/fgene.2018.00139

[…] to have an effect on mirna binding sites (mirsnps) results from three different prediction tools were integrated:, (1) polymirts v.3.0 (http://compbio.uthsc.edu/mirsnp/; bhattacharya et al., ); (2) mirnasnp2 (http://www.bioguo.org/mirnasnp2; liu c. et al., ); and (3) mirsnpscore (http://www.bigr.medisin.ntnu.no/mirsnpscore; thomas et al., )., polymirts v3.0 (accessed 15 feb 2016) uses dbsnp […]

PMCID: 5842303
PMID: 29504307
DOI: 10.4093/dmj.2018.42.1.74

[…] in mirna seed regions. one approach was based on identifying the previously known mir-ts-snps. polymirts (http://compbio.uthsc.edu/mirsnp/) [], mirsnp (http://202.38.126.151/hmdd/mirsnp/search/) and mirnasnp (http://www.bioguo.org/mirnasnp/) are three examples of databases using this approach. in the other approach, we first predicted mirna target sites within the 3’utrs of the apoa5 gene […]

PMCID: 5836839
PMID: 29504892
DOI: 10.1186/s12864-018-4473-8

[…] revisited mirna sequences were taken from the mirbase-21.0 whose identifiers are simultaneously presented in []. this set contains more than one thousand animal pre-mirnas., we used the snp database mirnasnp-2.0 (based on mirbase-19.0 and dbsnp137) [] to calculate the snp densities in human mirna genes and their flanks. the dataset contains both common (minor allele frequency > 0.01) and rare […]

PMCID: 5760646
PMID: 29317647
DOI: 10.1038/s41598-017-17518-4

[…] hiwi2 gene and due to its position it may affect mrna stability or may alter the binding affinity of regulatory mirnas., we used several databases including, mirbase (http://microrna.sanger.ac.uk), mirnasnp (http://www.bioguo.org/mirnasnp/index.php), microsniper http://vm24141.virt.gwdg.de/services/microsniper/index.php), targetscan (http:// targetscan.org/vert_71/) in order to predict mirnas […]

PMCID: 5805515
PMID: 29467929
DOI: 10.18632/oncotarget.23190

[…] obtained from the patients before therapy. all clinical results were blinded by genotype., the snps in the mirna precursors and their allele frequencies () were obtained from the online databases mirnasnp 2.0 (www.bioguo.org/mirnasnp2) and ncbi dbsnp (https://www.ncbi.nlm.nih.gov/projects/snp/), respectively. thirty two snps with minor allele frequencies ≥ 10% were determined by using […]


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miRNASNP institution(s)
Hubei Bioinformatics & Molecular Imaging Key Laboratory, Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China

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