miRNAsong specifications

Unique identifier:
OMICS_15286
Interface:
Web user interface
Input data:
MicroRNA Sequence, Sponge sequence.
Programming languages:
C++, PHP
Version:
1.0
Stability:
Stable
Name:
MicroRNA SpONge Generator and tester
Restrictions to use:
None
Output data:
In addition to a detailed graphical output displaying miRNA/sponge interactions, miRNAsong also generates final sponge sense and antisense sequences for easy oligonucleotide ordering.
Computer skills:
Basic
First release date:
2016
Maintained:
Yes
  • Animals
    • Bombyx mori
    • Bos taurus
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Gallus gallus
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus
    • Xenopus laevis
    • Xenopus tropicalis
  • Plants
    • Arabidopsis thaliana
    • Carica papaya
    • Glycine max
    • Hordeum vulgare
    • Medicago truncatula
    • Oryza sativa
    • Populus trichocarpa
    • Triticum aestivum
    • Vitis vinifera
    • Zea mays

miRNAsong distribution

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miRNAsong support

Documentation

Maintainer

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Publications

Institution(s)

International Clinical Research Center, St Anne’s University Hospital Brno, Brno, Czech Republic; Department of Histology and Embryology, Faculty of Medicine, Masaryk University, Brno, Czech Republic

Funding source(s)

This study was supported by the European Regional Development Fund, Project FNUSA-ICRC (No. CZ.1.05/1.1.00/02.0123), Project ICRC-ERA-HumanBridge (no. 316345) funded by the European Commission, Project GJ16-24004Y funded by the Czech Science Foundation GA CR, and by funds from the Faculty of Medicine of Masaryk University (MUNI/A/1352/2015).

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