miRNAsong specifications

Information


Unique identifier OMICS_15286
Name miRNAsong
Alternative name MicroRNA SpONge Generator and tester
Interface Web user interface
Restrictions to use None
Input data MicroRNA Sequence, Sponge sequence.
Output data In addition to a detailed graphical output displaying miRNA/sponge interactions, miRNAsong also generates final sponge sense and antisense sequences for easy oligonucleotide ordering.
Programming languages C++, PHP
Computer skills Basic
Version 1.0
First release date 2016
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Bombyx mori
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Mammals
    • Bos taurus
  • Plants and Fungi
    • Arabidopsis thaliana
    • Carica papaya
    • Glycine max
    • Hordeum vulgare
    • Medicago truncatula
    • Oryza sativa
    • Populus trichocarpa
    • Triticum aestivum
    • Vitis vinifera
    • Zea mays
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio
    • Gallus gallus
    • Xenopus laevis
    • Xenopus tropicalis

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Documentation


Maintainer


Publication for MicroRNA SpONge Generator and tester

miRNAsong institution(s)
International Clinical Research Center, St Anne’s University Hospital Brno, Brno, Czech Republic; Department of Histology and Embryology, Faculty of Medicine, Masaryk University, Brno, Czech Republic
miRNAsong funding source(s)
This study was supported by the European Regional Development Fund, Project FNUSA-ICRC (No. CZ.1.05/1.1.00/02.0123), Project ICRC-ERA-HumanBridge (no. 316345) funded by the European Commission, Project GJ16-24004Y funded by the Czech Science Foundation GA CR, and by funds from the Faculty of Medicine of Masaryk University (MUNI/A/1352/2015).

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