miRonTop statistics

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miRonTop specifications

Information


Unique identifier OMICS_14645
Name miRonTop
Interface Web user interface
Restrictions to use None
Input data Results of a global mRNA expression data
Input format TXT
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for miRonTop

miRonTop citations

 (3)
library_books

“Seed Milarity” Confers to hsa miR 210 and hsa miR 147b Similar Functional Activity

2012
PLoS One
PMCID: 3441733
PMID: 23028679
DOI: 10.1371/journal.pone.0044919

[…] is mandatory to establish a minimal set of mRNA modulated by a given miRNA and offer the opportunity to identify miRNAs with overlapping regulatory functions. Using our recently described application MiRonTop and a large set of miRNA-overexpressed microarray experiments, we noticed indeed a close relationship between two miRNAs from distinct families, hsa-miR-147b and hsa-miR-210. While these 2 s […]

library_books

Deregulated MicroRNAs in Myotonic Dystrophy Type 2

2012
PLoS One
PMCID: 3387258
PMID: 22768114
DOI: 10.1371/journal.pone.0039732

[…] /mRNAs couples displaying a statistically significant reciprocal correlation of their expression levels were included; 3) among the genes passing filters 1 and 2, predicted targets were identified by MiRonTop . After this highly selective selection, 1,093 miRNA/mRNA interactions were identified. Several mRNAs were targeted by more than one miRNA, leading to a potential reinforcement of the final d […]

library_books

Identification of microRNA precursors based on random forest with network level representation method of stem loop structure

2011
BMC Bioinformatics
PMCID: 3118167
PMID: 21575268
DOI: 10.1186/1471-2105-12-165

[…] unction, the identification of miRNA targets using computational methods has developed in an increasing number. Recent improvements in this field have been reported in Li J et al [], Target-align [], MiRonTop [], etc.Recent studies showed various ways to represent RNA structure with graphs (Figure ), such as bracketed, tree, dual graph, etc. These representations specify the connectivity between R […]

Citations

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miRonTop institution(s)
Centre National de la Recherche Scientifique, Institut de Pharmacologie Moléculaire et Cellulaire, UMR6097, Sophia-Antipolis, France; University of Nice Sophia Antipolis, Nice, France
miRonTop funding source(s)
Supported by MICROENVIMET, FP7-HEALTH-F2-2008-201279, ARC, INCa and Vaincre la Mucoviscidose.

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