MiRPara protocols

MiRPara specifications

Information


Unique identifier OMICS_00380
Name MiRPara
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for MiRPara

MiRPara IN pipeline

2017
PMCID: 5209728
PMID: 28051166
DOI: 10.1038/srep39742

[…] reads were then mapped to the m. sympodalis genome (zhu y et al., manuscript submitted) using the bowtie alignment software package51., to predict potential small rna features, a modified version of mirpara52 was used to parse the generated sam alignment files and examine the proximity of mapped reads to annotated coding regions. reads that mapped to non-coding regions (i.e. outside regions […]

MiRPara institution(s)
Bioinformatics Group, State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Science, China

MiRPara reviews

 (2)
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Anonymous user #153

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Desktop
you need to download the UNAFold software separately from
http://mfold.rna.albany.edu/?q=DINAMelt/software
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Anonymous user #152

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Desktop
It works as expected. I did face a few hiccups while installing it due to my own limited knowledge of Linux. However, Mr. Yoggan Wu was immensely helpful in guiding me through the process.
Thank you for the wonderful tool !!