miRquant specifications

Information


Unique identifier OMICS_16114
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The small RNA sequences.
Output data The mapping statistics, the expression correlation heatmap, the read length distribution, the reads per million mapped, the reads per million miRNAs mapped, the 3' non-templated additions.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 2.0
Stability Stable
Requirements Cutadapt, bedtools, bowtie, SHRiMP, R
Maintained Yes

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Maintainer


  • person_outline Praveen Sethupathy <>
miRquant institution(s)
Department of Genetics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
miRquant funding source(s)
This work was supported in part by a grant from NIH/NIDDK (R01DK105965), from the American Heart Association (Collaborative Science Award awarded), and from the American Diabetes Association Pathway Program (1-16-ACE-47).

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