miRtest statistics

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Citations per year

Number of citations per year for the bioinformatics software tool miRtest
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Tool usage distribution map

This map represents all the scientific publications referring to miRtest per scientific context
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Associated diseases

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Popular tool citations

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miRtest specifications

Information


Unique identifier OMICS_27458
Name miRtest
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.8
Stability Stable
Requirements
limma, MASS, corpcor, globaltest, GlobalAncova, RepeatedHighDim
Source code URL https://cran.r-project.org/src/contrib/miRtest_1.8.tar.gz
Maintained Yes

Versioning


No version available

Documentation


Maintainers


  • person_outline Tim Beissbarth
  • person_outline Stephan Artmann

Publication for miRtest

miRtest citation

library_books

Integrated miRNA and mRNA profiling of tumor‐educated macrophages identifies prognostic subgroups in estrogen receptor‐positive breast cancer

2014
Mol Oncol
PMCID: 5528681
PMID: 25205039
DOI: 10.1016/j.molonc.2014.07.023

[…] All expression data were log‐transformed and quantile‐normalized. We utilized the R‐package ‘miRtest’ () to detect miRNAs that were both differentially regulated and had an effect on their target mRNA set. Matching of miRNA to mRNA data was obtained from microCosm (). Gene identifiers were ma […]


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miRtest institution(s)
Department of Medical Statistics, University Medical Center Gottingen, Gottingen, Germany; Department of Hematology and Oncology, University Medical Center Gottingen, Gottingen, Germany
miRtest funding source(s)
Supported by the Deutsche Forschungsgemeinschaft (clinical research group KFO 179), research group FOR 942 and the German Ministry of Education and Research (BMBF) grant BreastSys from the platform MedSys.

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