miRTex statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

Associated diseases

miRTex specifications


Unique identifier OMICS_10234
Name miRTex
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A json string of a hash table, which contains (doc_id, text) mappings.
Output data A json string of a hash table, which contains (doc_id, mentions) mappings.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Source code URL https://gist.github.com/leebird/c614c8e0a2a13e3dbc99c44fe59659bd



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Additional information

A database of miRTex results is also available here

Publication for miRTex

miRTex in publication

PMCID: 5346376
PMID: 28331849
DOI: 10.1155/2017/6213474

[…] mining has contributed to their recognition in the unstructured text [, ]., different text mining implementations for exploring the finding of genome research have been developed in the past decade. mirtex is a text mining system developed for mining experimentally validated microrna gene targets from pubmed articles. the system has been successfully implemented to identify the triple negative […]

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miRTex institution(s)
Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington DC, WA, USA; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA
miRTex funding source(s)
Supported by the National Science Foundation under Grant ABI-1062520 and by the National Institutes of Health Delaware INBRE program under Grant P20GM103446.

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