miRTex statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Relation extraction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

miRTex specifications

Information


Unique identifier OMICS_10234
Name miRTex
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A json string of a hash table, which contains (doc_id, text) mappings.
Output data A json string of a hash table, which contains (doc_id, mentions) mappings.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Source code URL https://gist.github.com/leebird/c614c8e0a2a13e3dbc99c44fe59659bd

Download


Versioning


Add your version

Documentation


Maintainer


This tool is not maintained anymore.

Additional information


A database of miRTex results is also available here

Publication for miRTex

miRTex in publication

PMCID: 5346376
PMID: 28331849
DOI: 10.1155/2017/6213474

[…] mining has contributed to their recognition in the unstructured text [, ]., different text mining implementations for exploring the finding of genome research have been developed in the past decade. mirtex is a text mining system developed for mining experimentally validated microrna gene targets from pubmed articles. the system has been successfully implemented to identify the triple negative […]


To access a full list of publications, you will need to upgrade to our premium service.

miRTex institution(s)
Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington DC, WA, USA; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA
miRTex funding source(s)
Supported by the National Science Foundation under Grant ABI-1062520 and by the National Institutes of Health Delaware INBRE program under Grant P20GM103446.

miRTex reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review miRTex