mirTools protocols

mirTools computational protocol

mirTools specifications


Unique identifier OMICS_00365
Name mirTools
Interface Web user interface
Restrictions to use None
Output data The typical output consists of six parts: Basic statistics, annotation, miRNA, miRNA targets, ncRNA and differential expression.
Output format HTML
Computer skills Basic
Version 2.0
Stability No
Maintained No


This tool is not available anymore.

Publications for mirTools

mirTools IN pipeline

PMCID: 5892942
PMID: 29570727
DOI: 10.1371/journal.ppat.1006942

[…] and eluted from the gel, concentrated and the libraries validated, quantified and finally pooled and sequenced on a hiseq 2000 and hiseq 4000., raw mirnaseq reads are quality checked by fastqc [54]. mirtools2.0 [55] pipeline is used for trimming (“adaptor_trim.pl” script) and downstream analysis of known mirnas. sequencing reads are aligned to the bostau7 genome using soap [56]. annotations […]

mirTools institution(s)
Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, Hefei, China; University of Science and Technology of China, Hefei, China; Institute of Genomic Medicine; Wenzhou Medical College, Wenzhou, China; Department of Laboratory Medicine, Third People’s Hospital of Wenzhou, Wenzhou, China; Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
mirTools funding source(s)
Supported by the National Natural Science Foundation of China (grant no. 31171236), the National High Technology Research and Development Program of China (2012AA02A201), the Key Science and Technology Innovation Team of Zhejiang Province (2012R10048-05), and the International S&T Cooperation Program of China (2011DFA30670).

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