miRVaS specifications

Information


Unique identifier OMICS_09979
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data miRVaS requires three input files: (i) a variant file in tab-delimited format with the genomic coordinates (zero based half open format), reference and alternative allele of the variants or in VCF format, (ii) a genome file and (iii) a miRNA database file describing all functional regions within the miRNAs.
Output data The output is presented in a tab-separated file, which enables fast screening, and in an html file, which allows visual comparison between wild-type and variant structures. All separate images are provided for downstream use.
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Advanced
Version 1.0.2
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Jurgen Del Favero <>

Information


Unique identifier OMICS_09979
Interface Web user interface
Restrictions to use None
Input data miRVaS requires three input files: (i) a variant file in tab-delimited format with the genomic coordinates (zero based half open format), reference and alternative allele of the variants or in VCF format, (ii) a genome file and (iii) a miRNA database file describing all functional regions within the miRNAs.
Output data The output is presented in a tab-separated file, which enables fast screening, and in an html file, which allows visual comparison between wild-type and variant structures. All separate images are provided for downstream use.
Programming languages Java
Computer skills Basic
Version 1.0.2
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Jurgen Del Favero <>

miRVaS article

miRVaS institution(s)
Applied Molecular Genomics Unit, Department of Molecular Genetics, VIB, Antwerp, Belgium; University of Antwerp, Antwerp, Belgium; Multiplicom NV, Niel, Belgium
miRVaS funding source(s)
Research Foundation—Flanders [G027410N]; University Research Fund [UA-KP BOF/MS-2013 6264]

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